Information for 1-ACTTTATTGGGAA (Motif 1)

C T G A G T A C A C G T A C G T C G A T C G T A C G A T C G A T A C T G A T C G C T A G C G T A C G T A
Reverse Opposite:
A C G T A C G T G A T C A T G C G T A C G C T A C G T A C G A T G C T A T G C A C G T A A C T G G A C T
p-value:1e-15
log p-value:-3.472e+01
Information Content per bp:1.749
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets44.3 +/- 25.8bp
Average Position of motif in Background32.9 +/- 2.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:ACTTTATTGGGAA
TTTTTATTGG---
 C T G A G T A C A C G T A C G T C G A T C G T A C G A T C G A T A C T G A T C G C T A G C G T A C G T A
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:ACTTTATTGGGAA
NTTTTATTGG---
 C T G A G T A C A C G T A C G T C G A T C G T A C G A T C G A T A C T G A T C G C T A G C G T A C G T A
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ACTTTATTGGGAA
-TTTTATKRGG--
 C T G A G T A C A C G T A C G T C G A T C G T A C G A T C G A T A C T G A T C G C T A G C G T A C G T A
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ACTTTATTGGGAA
NTTTTATTGG---
 C T G A G T A C A C G T A C G T C G A T C G T A C G A T C G A T A C T G A T C G C T A G C G T A C G T A
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ACTTTATTGGGAA
NNANTTTTATTGGNNN
 A C G T A C G T A C G T C T G A G T A C A C G T A C G T C G A T C G T A C G A T C G A T A C T G A T C G C T A G C G T A C G T A
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ACTTTATTGGGAA
-TTTTATTRGN--
 C T G A G T A C A C G T A C G T C G A T C G T A C G A T C G A T A C T G A T C G C T A G C G T A C G T A
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ACTTTATTGGGAA
NNAATTTTATTGGNTN
 A C G T A C G T A C G T C T G A G T A C A C G T A C G T C G A T C G T A C G A T C G A T A C T G A T C G C T A G C G T A C G T A
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ACTTTATTGGGAA---
-CCGTATTATAAACAA
 C T G A G T A C A C G T A C G T C G A T C G T A C G A T C G A T A C T G A T C G C T A G C G T A C G T A A C G T A C G T A C G T
A C G T G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ACTTTATTGGGAA
-TTTTATTGC---
 C T G A G T A C A C G T A C G T C G A T C G T A C G A T C G A T A C T G A T C G C T A G C G T A C G T A
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ACTTTATTGGGAA
DGWTTTATGRCN--
 A C G T C T G A G T A C A C G T A C G T C G A T C G T A C G A T C G A T A C T G A T C G C T A G C G T A C G T A
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T