Information for 6-TGCAACATGGCGG (Motif 4)

G A C T T A C G G T A C G T C A C T G A T G A C G C T A A G C T A C T G A C T G A G T C C T A G A C T G
Reverse Opposite:
A G T C A G T C C T A G A G T C A G T C C T G A C A G T A C T G A G C T A C G T C A T G A T G C C T G A
p-value:1e-13
log p-value:-3.087e+01
Information Content per bp:1.756
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.75%
Number of Background Sequences with motif335.7
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets41.6 +/- 24.8bp
Average Position of motif in Background49.5 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.85
Offset:2
Orientation:forward strand
Alignment:TGCAACATGGCGG-
--CAAGATGGCGGC
 G A C T T A C G G T A C G T C A C T G A T G A C G C T A A G C T A C T G A C T G A G T C C T A G A C T G A C G T
A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.85
Offset:2
Orientation:forward strand
Alignment:TGCAACATGGCGG-
--CAAGATGGCGGC
 G A C T T A C G G T A C G T C A C T G A T G A C G C T A A G C T A C T G A C T G A G T C C T A G A C T G A C G T
A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:TGCAACATGGCGG--
----TAATGGCGGNC
 G A C T T A C G G T A C G T C A C T G A T G A C G C T A A G C T A C T G A C T G A G T C C T A G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TGCAACATGGCGG------
--NAGANTGGCGGGGNGNA
 G A C T T A C G G T A C G T C A C T G A T G A C G C T A A G C T A C T G A C T G A G T C C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.62
Offset:6
Orientation:forward strand
Alignment:TGCAACATGGCGG
------TTGGCA-
 G A C T T A C G G T A C G T C A C T G A T G A C G C T A A G C T A C T G A C T G A G T C C T A G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TGCAACATGGCGG-
-----NTTGGCANN
 G A C T T A C G G T A C G T C A C T G A T G A C G C T A A G C T A C T G A C T G A G T C C T A G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:TGCAACATGGCGG
-----CTTGGCAA
 G A C T T A C G G T A C G T C A C T G A T G A C G C T A A G C T A C T G A C T G A G T C C T A G A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TGCAACATGGCGG
----TNNGGGCAG
 G A C T T A C G G T A C G T C A C T G A T G A C G C T A A G C T A C T G A C T G A G T C C T A G A C T G
A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TGCAACATGGCGG-
----NNTTGGCANN
 G A C T T A C G G T A C G T C A C T G A T G A C G C T A A G C T A C T G A C T G A G T C C T A G A C T G A C G T
A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

PB0201.1_Zfp281_2/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TGCAACATGGCGG------
--NNNATTGGGGGTNTCCT
 G A C T T A C G G T A C G T C A C T G A T G A C G C T A A G C T A C T G A C T G A G T C C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T