Information for 3-GAGGGAAKTTCCA (Motif 4)

C T A G G T C A C A T G C T A G C T A G C G T A C G T A C A T G A C G T A C G T A G T C G T A C G T C A
Reverse Opposite:
A C G T A C T G C T A G G T C A G T C A G T A C C G A T A C G T A G T C A G T C G T A C A C G T A G T C
p-value:1e-14
log p-value:-3.241e+01
Information Content per bp:1.781
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif22.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets51.0 +/- 28.1bp
Average Position of motif in Background62.5 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:GAGGGAAKTTCCA
--GGGAATTTCC-
 C T A G G T C A C A T G C T A G C T A G C G T A C G T A C A T G A C G T A C G T A G T C G T A C G T C A
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GAGGGAAKTTCCA
--GGGAATTTCC-
 C T A G G T C A C A T G C T A G C T A G C G T A C G T A C A T G A C G T A C G T A G T C G T A C G T C A
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GAGGGAAKTTCCA
-NGGGGATTTCCC
 C T A G G T C A C A T G C T A G C T A G C G T A C G T A C A T G A C G T A C G T A G T C G T A C G T C A
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GAGGGAAKTTCCA
--GGGGATTTCC-
 C T A G G T C A C A T G C T A G C T A G C G T A C G T A C A T G A C G T A C G T A G T C G T A C G T C A
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GAGGGAAKTTCCA
---GGAAANCCCC
 C T A G G T C A C A T G C T A G C T A G C G T A C G T A C A T G A C G T A C G T A G T C G T A C G T C A
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFATC1/MA0624.1/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GAGGGAAKTTCCA--
-----ATTTTCCATT
 C T A G G T C A C A T G C T A G C T A G C G T A C G T A C A T G A C G T A C G T A G T C G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGGGAAKTTCCA
GGCGGGAARN----
 A C G T C T A G G T C A C A T G C T A G C T A G C G T A C G T A C A T G A C G T A C G T A G T C G T A C G T C A
T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T A C G T A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GAGGGAAKTTCCA--
-----ATTTTCCATT
 C T A G G T C A C A T G C T A G C T A G C G T A C G T A C A T G A C G T A C G T A G T C G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GAGGGAAKTTCCA--
-----ATTTTCCATT
 C T A G G T C A C A T G C T A G C T A G C G T A C G T A C A T G A C G T A C G T A G T C G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T

E2F6/MA0471.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGGGAAKTTCCA
GGGCGGGAAGG----
 A C G T A C G T C T A G G T C A C A T G C T A G C T A G C G T A C G T A C A T G A C G T A C G T A G T C G T A C G T C A
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T A C G T A C G T