Information for 4-ATGTGCTAAA (Motif 3)

C T G A C G A T T A C G C G A T C A T G G A T C G A C T T C G A G C T A G C T A
Reverse Opposite:
C G A T C G A T A G C T C T G A C T A G G T A C G C T A A T G C G C T A G A C T
p-value:1e-18
log p-value:-4.327e+01
Information Content per bp:1.659
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif6.92%
Number of Background Sequences with motif714.3
Percentage of Background Sequences with motif1.53%
Average Position of motif in Targets57.2 +/- 26.2bp
Average Position of motif in Background48.2 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-ATGTGCTAAA
AAGGTGTKAA-
 A C G T C T G A C G A T T A C G C G A T C A T G G A T C G A C T T C G A G C T A G C T A
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:ATGTGCTAAA
AGGTGTTAAT
 C T G A C G A T T A C G C G A T C A T G G A T C G A C T T C G A G C T A G C T A
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

PB0096.1_Zfp187_1/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ATGTGCTAAA--
TTATGTACTAATAA
 A C G T A C G T C T G A C G A T T A C G C G A T C A T G G A T C G A C T T C G A G C T A G C T A A C G T A C G T
A G C T G A C T T C G A G A C T C T A G C G A T C T G A A G T C A G C T G C T A C G T A C G A T C G T A G T C A

TBR1/MA0802.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ATGTGCTAAA
AGGTGTGAAA
 C T G A C G A T T A C G C G A T C A T G G A T C G A C T T C G A G C T A G C T A
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A

TBX2/MA0688.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ATGTGCTAAA
AAGGTGTGAAA
 A C G T C T G A C G A T T A C G C G A T C A T G G A T C G A C T T C G A G C T A G C T A
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:ATGTGCTAAA-
-GGTGCCAAGT
 C T G A C G A T T A C G C G A T C A T G G A T C G A C T T C G A G C T A G C T A A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ATGTGCTAAA
AGGTGTGAAM
 C T G A C G A T T A C G C G A T C A T G G A T C G A C T T C G A G C T A G C T A
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATGTGCTAAA
AATTTGCTGAC
 A C G T C T G A C G A T T A C G C G A T C A T G G A T C G A C T T C G A G C T A G C T A
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ATGTGCTAAA
-TATGCAAAT
 C T G A C G A T T A C G C G A T C A T G G A T C G A C T T C G A G C T A G C T A
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

POU3F2/MA0787.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATGTGCTAAA--
TTATGCAAATTA
 C T G A C G A T T A C G C G A T C A T G G A T C G A C T T C G A G C T A G C T A A C G T A C G T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A