Information for 1-CASNNNDSTGYKAAAT (Motif 1)

G T A C C G T A T A G C A T G C C G T A G C T A C T A G A T C G C G A T A C T G G A C T C A T G C T G A G C T A C G T A C G A T
Reverse Opposite:
G C T A G C A T C G A T G A C T G T A C C T G A G T A C C G T A T A G C G A T C C G A T G A C T T A C G A T C G C G A T A C T G
p-value:1e-165
log p-value:-3.822e+02
Information Content per bp:1.519
Number of Target Sequences with motif269.0
Percentage of Target Sequences with motif34.49%
Number of Background Sequences with motif1908.4
Percentage of Background Sequences with motif4.09%
Average Position of motif in Targets53.0 +/- 20.2bp
Average Position of motif in Background50.4 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer

Match Rank:1
Score:0.87
Offset:-5
Orientation:reverse strand
Alignment:-----CASNNNDSTGYKAAAT
NTTMRCACNNNVSTGYKAANT
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A T A G C A T G C C G T A G C T A C T A G A T C G C G A T A C T G G A C T C A T G C T G A G C T A C G T A C G A T
G C A T A G C T G A C T T G C A C T G A T A G C C T G A A T G C G A T C A G C T T G C A T C A G A T C G G A C T T A C G G A C T A C T G C T G A C T G A G C T A G C A T

TBX19/MA0804.1/Jaspar

Match Rank:2
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----CASNNNDSTGYKAAAT
TTTCACACCTAGGTGTGAAA-
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A T A G C A T G C C G T A G C T A C T A G A T C G C G A T A C T G G A C T C A T G C T G A G C T A C G T A C G A T
C G A T C A G T G A C T T G A C C T G A A G T C T C G A G A T C T G A C G C A T C T G A A C T G C T A G A G C T C T A G G A C T A C T G C T G A G C T A G C T A A C G T

T/MA0009.2/Jaspar

Match Rank:3
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---CASNNNDSTGYKAAAT
TCACACCTAGGTGTGA---
 A C G T A C G T A C G T G T A C C G T A T A G C A T G C C G T A G C T A C T A G A T C G C G A T A C T G G A C T C A T G C T G A G C T A C G T A C G A T
G A C T T G A C C T G A A G T C C T G A G A T C T G A C G C A T C T G A A C T G C T A G A G C T C T A G G A C T A C T G C T G A A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.71
Offset:4
Orientation:forward strand
Alignment:CASNNNDSTGYKAAAT
----AAGGTGTKAA--
 G T A C C G T A T A G C A T G C C G T A G C T A C T A G A T C G C G A T A C T G G A C T C A T G C T G A G C T A C G T A C G A T
A C G T A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:5
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:CASNNNDSTGYKAAAT
-----AGGTGTTAAT-
 G T A C C G T A T A G C A T G C C G T A G C T A C T A G A T C G C G A T A C T G G A C T C A T G C T G A G C T A C G T A C G A T
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:6
Score:0.67
Offset:5
Orientation:forward strand
Alignment:CASNNNDSTGYKAAAT
-----AGGTGTGAAM-
 G T A C C G T A T A G C A T G C C G T A G C T A C T A G A T C G C G A T A C T G G A C T C A T G C T G A G C T A C G T A C G A T
A C G T A C G T A C G T A C G T A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T

TBX2/MA0688.1/Jaspar

Match Rank:7
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CASNNNDSTGYKAAAT
----AAGGTGTGAAA-
 G T A C C G T A T A G C A T G C C G T A G C T A C T A G A T C G C G A T A C T G G A C T C A T G C T G A G C T A C G T A C G A T
A C G T A C G T A C G T A C G T C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T

TBR1/MA0802.1/Jaspar

Match Rank:8
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CASNNNDSTGYKAAAT
-----AGGTGTGAAA-
 G T A C C G T A T A G C A T G C C G T A G C T A C T A G A T C G C G A T A C T G G A C T C A T G C T G A G C T A C G T A C G A T
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T

EOMES/MA0800.1/Jaspar

Match Rank:9
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CASNNNDSTGYKAAAT-
----AAGGTGTGAAAAT
 G T A C C G T A T A G C A T G C C G T A G C T A C T A G A T C G C G A T A C T G G A C T C A T G C T G A G C T A C G T A C G A T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

PB0013.1_Eomes_1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CASNNNDSTGYKAAAT--
-GAAAAGGTGTGAAAATT
 G T A C C G T A T A G C A T G C C G T A G C T A C T A G A T C G C G A T A C T G G A C T C A T G C T G A G C T A C G T A C G A T A C G T A C G T
A C G T A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T