Information for 20-GAGCCATCACMTGCTG (Motif 23)

A T C G G T C A A C T G A G T C G T A C C T G A C A G T G T A C C G T A A G T C G T A C A C G T A C T G A T G C A C G T C T A G
Reverse Opposite:
G A T C C G T A A T C G G T A C C G T A C A T G C T A G G A C T A C T G G C T A A G C T A C T G T A C G A G T C A C G T A T G C
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.711
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.7 +/- 27.6bp
Average Position of motif in Background51.4 +/- 35.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:GAGCCATCACMTGCTG-----
------TCNCCTGCTGNGNNN
 A T C G G T C A A C T G A G T C G T A C C T G A C A G T G T A C C G T A A G T C G T A C A C G T A C T G A T G C A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:GAGCCATCACMTGCTG-----
------TNTCCTGCTGTGNNG
 A T C G G T C A A C T G A G T C G T A C C T G A C A G T G T A C C G T A A G T C G T A C A C G T A C T G A T G C A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.64
Offset:9
Orientation:forward strand
Alignment:GAGCCATCACMTGCTG---
---------CCTGCTGAGH
 A T C G G T C A A C T G A G T C G T A C C T G A C A G T G T A C C G T A A G T C G T A C A C G T A C T G A T G C A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:GAGCCATCACMTGCTG-----
------NNTCCTGCTGTGNNN
 A T C G G T C A A C T G A G T C G T A C C T G A C A G T G T A C C G T A A G T C G T A C A C G T A C T G A T G C A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GAGCCATCACMTGCTG--
------CCCCCTGCTGTG
 A T C G G T C A A C T G A G T C G T A C C T G A C A G T G T A C C G T A A G T C G T A C A C G T A C T G A T G C A C G T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GAGCCATCACMTGCTG
----SNGCACCTGCHS
 A T C G G T C A A C T G A G T C G T A C C T G A C A G T G T A C C G T A A G T C G T A C A C G T A C T G A T G C A C G T C T A G
A C G T A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GAGCCATCACMTGCTG---
----GGCCYCCTGCTGDGH
 A T C G G T C A A C T G A G T C G T A C C T G A C A G T G T A C C G T A A G T C G T A C A C G T A C T G A T G C A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

SNAI2/MA0745.1/Jaspar

Match Rank:8
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GAGCCATCACMTGCTG
------NCACCTGTN-
 A T C G G T C A A C T G A G T C G T A C C T G A C A G T G T A C C G T A A G T C G T A C A C G T A C T G A T G C A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:9
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GAGCCATCACMTGCTG---
------CCACCTGTTGCAT
 A T C G G T C A A C T G A G T C G T A C C T G A C A G T G T A C C G T A A G T C G T A C A C G T A C T G A T G C A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:10
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GAGCCATCACMTGCTG
-------CACGTGNT-
 A T C G G T C A A C T G A G T C G T A C C T G A C A G T G T A C C G T A A G T C G T A C A C G T A C T G A T G C A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A A T G C T A C G G A C T C T A G A T C G A G C T A C G T