Information for 17-AAAATTTNAGATWTTT (Motif 22)

C T G A C T G A G C T A C G T A A G C T A G C T G A C T T C A G C T G A C T A G C T G A A G C T C G T A G A C T A G C T A C G T
Reverse Opposite:
C G T A C T G A C T G A G C A T C T G A A G C T A G T C A G C T A G T C C G T A C T G A C T G A A C G T C G A T G A C T A G C T
p-value:1e-9
log p-value:-2.160e+01
Information Content per bp:1.675
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif72.7
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets42.6 +/- 20.5bp
Average Position of motif in Background46.5 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AAAATTTNAGATWTTT-
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T C T G A C T G A G C T A C G T A A G C T A G C T G A C T T C A G C T G A C T A G C T G A A G C T C G T A G A C T A G C T A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AAAATTTNAGATWTTT
--NATTCAAAT-----
 C T G A C T G A G C T A C G T A A G C T A G C T G A C T T C A G C T G A C T A G C T G A A G C T C G T A G A C T A G C T A C G T
A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AAAATTTNAGATWTTT
--AATTAGTG------
 C T G A C T G A G C T A C G T A A G C T A G C T G A C T T C A G C T G A C T A G C T G A A G C T C G T A G A C T A G C T A C G T
A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AAAATTTNAGATWTTT----
---NATTTAAGTACTTNAAA
 C T G A C T G A G C T A C G T A A G C T A G C T G A C T T C A G C T G A C T A G C T G A A G C T C G T A G A C T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:5
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AAAATTTNAGATWTTT----
----CTTTAAGTACTTAATG
 C T G A C T G A G C T A C G T A A G C T A G C T G A C T T C A G C T G A C T A G C T G A A G C T C G T A G A C T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AAAATTTNAGATWTTT
GWAAYHTGAKMC----
 C T G A C T G A G C T A C G T A A G C T A G C T G A C T T C A G C T G A C T A G C T G A A G C T C G T A G A C T A G C T A C G T
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T A C G T A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AAAATTTNAGATWTTT----
---NATTTAAGTACTTANNA
 C T G A C T G A G C T A C G T A A G C T A G C T G A C T T C A G C T G A C T A G C T G A A G C T C G T A G A C T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

SOX8/MA0868.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AAAATTTNAGATWTTT
AACACTGCACATTGTT
 C T G A C T G A G C T A C G T A A G C T A G C T G A C T T C A G C T G A C T A G C T G A A G C T C G T A G A C T A G C T A C G T
C T G A C G T A A G T C G T C A G T A C A C G T T A C G T G A C C G T A G A T C G T C A A C G T A G C T A C T G A C G T C G A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:AAAATTTNAGATWTTT
----TTTGAAACCG--
 C T G A C T G A G C T A C G T A A G C T A G C T G A C T T C A G C T G A C T A G C T G A A G C T C G T A G A C T A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AAAATTTNAGATWTTT
CTAATATTGCTAAA----
 A C G T A C G T C T G A C T G A G C T A C G T A A G C T A G C T G A C T T C A G C T G A C T A G C T G A A G C T C G T A G A C T A G C T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T A C G T A C G T A C G T