Information for 8-GAAGGGCTTTTCC (Motif 9)

A T C G G T C A C G T A A C T G A C T G A C T G G T A C A C G T A C G T A G C T A G C T A T G C A G T C
Reverse Opposite:
C T A G A T C G C T G A C T G A C G T A C G T A A C T G A G T C A G T C A G T C A C G T A C G T A T G C
p-value:1e-11
log p-value:-2.585e+01
Information Content per bp:1.861
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.4 +/- 29.1bp
Average Position of motif in Background65.1 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GAAGGGCTTTTCC
---GGGGATTTCC
 A T C G G T C A C G T A A C T G A C T G A C T G G T A C A C G T A C G T A G C T A G C T A T G C A G T C
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAAGGGCTTTTCC
-NGGGGATTTCCC
 A T C G G T C A C G T A A C T G A C T G A C T G G T A C A C G T A C G T A G C T A G C T A T G C A G T C
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GAAGGGCTTTTCC
---GGGAATTTCC
 A T C G G T C A C G T A A C T G A C T G A C T G G T A C A C G T A C G T A G C T A G C T A T G C A G T C
A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GAAGGGCTTTTCC
---GGGAATTTCC
 A T C G G T C A C G T A A C T G A C T G A C T G G T A C A C G T A C G T A G C T A G C T A T G C A G T C
A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAAGGGCTTTTCC
--GGGGATTTCC-
 A T C G G T C A C G T A A C T G A C T G A C T G G T A C A C G T A C G T A G C T A G C T A T G C A G T C
A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAAGGGCTTTTCC
GCAGTGATTT---
 A T C G G T C A C G T A A C T G A C T G A C T G G T A C A C G T A C G T A G C T A G C T A T G C A G T C
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GAAGGGCTTTTCC
--NGGGATTA---
 A T C G G T C A C G T A A C T G A C T G A C T G G T A C A C G T A C G T A G C T A G C T A T G C A G T C
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGGCTTTTCC
TGCTGTGATTT---
 A C G T A T C G G T C A C G T A A C T G A C T G A C T G G T A C A C G T A C G T A G C T A G C T A T G C A G T C
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:9
Score:0.57
Offset:7
Orientation:forward strand
Alignment:GAAGGGCTTTTCC-
-------TTTTCCA
 A T C G G T C A C G T A A C T G A C T G A C T G G T A C A C G T A C G T A G C T A G C T A T G C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GAAGGGCTTTTCC--
---GGGGATTCCCCC
 A T C G G T C A C G T A A C T G A C T G A C T G G T A C A C G T A C G T A G C T A G C T A T G C A G T C A C G T A C G T
A C G T A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C