Information for 2-CATTGGTCMTTCT (Motif 9)

A G T C C G T A A C G T C A G T A T C G A C T G A C G T A G T C G T A C A C G T A C G T A T G C C G A T
Reverse Opposite:
C G T A A T C G T C G A G T C A C A T G T A C G T C G A T G A C A T G C G T C A T G C A A C G T C T A G
p-value:1e-9
log p-value:-2.194e+01
Information Content per bp:1.706
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif95.5
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets49.4 +/- 28.6bp
Average Position of motif in Background48.9 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0070.1_Sox30_1/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CATTGGTCMTTCT
ANNTCCATTGTTCNNN--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C A G T A T C G A C T G A C G T A G T C G T A C A C G T A C G T A T G C C G A T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CATTGGTCMTTCT
CCATTGTTC-----
 A C G T A G T C C G T A A C G T C A G T A T C G A C T G A C G T A G T C G T A C A C G T A C G T A T G C C G A T
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATTGGTCMTTCT
CCATTGTTYB----
 A C G T A G T C C G T A A C G T C A G T A T C G A C T G A C G T A G T C G T A C A C G T A C G T A T G C C G A T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CATTGGTCMTTCT
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T C A G T A T C G A C T G A C G T A G T C G T A C A C G T A C G T A T G C C G A T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CATTGGTCMTTCT
NCCATTGTTC-----
 A C G T A C G T A G T C C G T A A C G T C A G T A T C G A C T G A C G T A G T C G T A C A C G T A C G T A T G C C G A T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CATTGGTCMTTCT
CCGATTGGCT-----
 A C G T A C G T A G T C C G T A A C G T C A G T A T C G A C T G A C G T A G T C G T A C A C G T A C G T A T G C C G A T
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:7
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------CATTGGTCMTTCT-
TNNANNTCTATTGTTNTNNANN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C A G T A T C G A C T G A C G T A G T C G T A C A C G T A C G T A T G C C G A T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CATTGGTCMTTCT
CCATTGTTTT----
 A C G T A G T C C G T A A C G T C A G T A T C G A C T G A C G T A G T C G T A C A C G T A C G T A T G C C G A T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CATTGGTCMTTCT
NCCATTGTTY-----
 A C G T A C G T A G T C C G T A A C G T C A G T A T C G A C T G A C G T A G T C G T A C A C G T A C G T A T G C C G A T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CATTGGTCMTTCT
CNNNTATTGTTCNNNNN
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T C A G T A T C G A C T G A C G T A G T C G T A C A C G T A C G T A T G C C G A T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A