Information for 9-GAGGTCGTSCACT (Motif 22)

A C T G G T C A A C T G A C T G A C G T A T G C T A C G A G C T A T G C G A T C G T C A G T A C G A C T
Reverse Opposite:
C T G A A C T G A C G T C A T G A T C G C T G A A T G C T A C G T G C A T A G C A G T C A C G T A G T C
p-value:1e-8
log p-value:-1.856e+01
Information Content per bp:1.709
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif85.4
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets56.9 +/- 25.3bp
Average Position of motif in Background49.0 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF354C/MA0130.1/Jaspar

Match Rank:1
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GAGGTCGTSCACT
------ATCCAC-
 A C T G G T C A A C T G A C T G A C G T A T G C T A C G A G C T A T G C G A T C G T C A G T A C G A C T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCGTSCACT
AGRGGTCA------
 A C G T A C T G G T C A A C T G A C T G A C G T A T G C T A C G A G C T A T G C G A T C G T C A G T A C G A C T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCGTSCACT
TRAGGTCA------
 A C G T A C T G G T C A A C T G A C T G A C G T A T G C T A C G A G C T A T G C G A T C G T C A G T A C G A C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGGTCGTSCACT
GAGSCCGAGC---
 A C T G G T C A A C T G A C T G A C G T A T G C T A C G A G C T A T G C G A T C G T C A G T A C G A C T
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:5
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------GAGGTCGTSCACT
NNANTGGTGGTCTTNNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A A C T G A C T G A C G T A T G C T A C G A G C T A T G C G A T C G T C A G T A C G A C T
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G A C G T A C G T

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GAGGTCGTSCACT
ATGACGTCATCN---
 A C G T A C G T A C T G G T C A A C T G A C T G A C G T A T G C T A C G A G C T A T G C G A T C G T C A G T A C G A C T
T C G A G C A T A C T G C T G A A G T C T C A G G A C T G T A C C G T A A G C T A G T C G A T C A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GAGGTCGTSCACT
GGGGGAATCCCC-
 A C T G G T C A A C T G A C T G A C G T A T G C T A C G A G C T A T G C G A T C G T C A G T A C G A C T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.50
Offset:8
Orientation:forward strand
Alignment:GAGGTCGTSCACT----
--------CCACTTGAA
 A C T G G T C A A C T G A C T G A C G T A T G C T A C G A G C T A T G C G A T C G T C A G T A C G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

JUND(var.2)/MA0492.1/Jaspar

Match Rank:9
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------GAGGTCGTSCACT
AAAGATGATGTCATC----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A A C T G A C T G A C G T A T G C T A C G A G C T A T G C G A T C G T C A G T A C G A C T
C G T A C T G A C G T A T C A G T C G A A C G T A C T G C G T A A G C T T C A G A G C T T G A C C G T A A G C T T G A C A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:GAGGTCGTSCACT---
------MRSCACTYAA
 A C T G G T C A A C T G A C T G A C G T A T G C T A C G A G C T A T G C G A T C G T C A G T A C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A