Information for 2-CCAGKRCASMRGW (Motif 7)

A G T C A G T C C G T A A C T G C A G T C T G A A T G C C G T A A T C G G T C A C T A G A C T G C G T A
Reverse Opposite:
C G A T A G T C A G T C A C G T A T G C A C G T A T C G A G C T G T C A A G T C A C G T A C T G A C T G
p-value:1e-6
log p-value:-1.384e+01
Information Content per bp:1.824
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif4.41%
Number of Background Sequences with motif13.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets65.3 +/- 10.4bp
Average Position of motif in Background66.1 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCAGKRCASMRGW--
-TAGGGCAAAGGTCA
 A G T C A G T C C G T A A C T G C A G T C T G A A T G C C G T A A T C G G T C A C T A G A C T G C G T A A C G T A C G T
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCAGKRCASMRGW
CCAGGAACAG----
 A C G T A G T C A G T C C G T A A C T G C A G T C T G A A T G C C G T A A T C G G T C A C T A G A C T G C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCAGKRCASMRGW
CAAGGHCANV---
 A G T C A G T C C G T A A C T G C A G T C T G A A T G C C G T A A T C G G T C A C T A G A C T G C G T A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCAGKRCASMRGW--
GTAGGGCAAAGGTCA
 A G T C A G T C C G T A A C T G C A G T C T G A A T G C C G T A A T C G G T C A C T A G A C T G C G T A A C G T A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCAGKRCASMRGW
TRAGGTCA-----
 A G T C A G T C C G T A A C T G C A G T C T G A A T G C C G T A A T C G G T C A C T A G A C T G C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCAGKRCASMRGW
BTCAAGGTCA-----
 A C G T A C G T A G T C A G T C C G T A A C T G C A G T C T G A A T G C C G T A A T C G G T C A C T A G A C T G C G T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCAGKRCASMRGW
NTCAAGGTCA-----
 A C G T A C G T A G T C A G T C C G T A A C T G C A G T C T G A A T G C C G T A A T C G G T C A C T A G A C T G C G T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CCAGKRCASMRGW
AAGTTCAAGGTCAGC---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C A G T C T G A A T G C C G T A A T C G G T C A C T A G A C T G C G T A
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCAGKRCASMRGW
-AAGGTCAC----
 A G T C A G T C C G T A A C T G C A G T C T G A A T G C C G T A A T C G G T C A C T A G A C T G C G T A
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCAGKRCASMRGW
WDNCTGGGCA-----
 A C G T A C G T A G T C A G T C C G T A A C T G C A G T C T G A A T G C C G T A A T C G G T C A C T A G A C T G C G T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T