Information for 5-GCTTTTMAWTWKMMTT (Motif 5)

A C T G A G T C A C G T A C G T A C G T A G C T G T A C C G T A C G T A A C G T C G T A A C G T G T A C G T C A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C T G T G A C C G A T C G T A C G A T A C G T C A G T C T G A C G T A C G T A C G T A A C T G A G T C
p-value:1e-7
log p-value:-1.823e+01
Information Content per bp:1.840
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif4.41%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.6 +/- 23.1bp
Average Position of motif in Background50.7 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCTTTTMAWTWKMMTT
--ATTTGAATT-----
 A C T G A G T C A C G T A C G T A C G T A G C T G T A C C G T A C G T A A C G T C G T A A C G T G T A C G T C A A C G T A C G T
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCTTTTMAWTWKMMTT-
GGGTTTAATTAAAATTC
 A C T G A G T C A C G T A C G T A C G T A G C T G T A C C G T A C G T A A C G T C G T A A C G T G T A C G T C A A C G T A C G T A C G T
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

Hoxd9/MA0913.1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GCTTTTMAWTWKMMTT
--TTTTTATTGC----
 A C T G A G T C A C G T A C G T A C G T A G C T G T A C C G T A C G T A A C G T C G T A A C G T G T A C G T C A A C G T A C G T
A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GCTTTTMAWTWKMMTT
----CTCATTTGCATW
 A C T G A G T C A C G T A C G T A C G T A G C T G T A C C G T A C G T A A C G T C G T A A C G T G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCTTTTMAWTWKMMTT
CCTTTGATGT------
 A C T G A G T C A C G T A C G T A C G T A G C T G T A C C G T A C G T A A C G T C G T A A C G T G T A C G T C A A C G T A C G T
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0069.1_Sox21_1/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCTTTTMAWTWKMMTT---
---TTTAATTATAATTAAG
 A C T G A G T C A C G T A C G T A C G T A G C T G T A C C G T A C G T A A C G T C G T A A C G T G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

PB0064.1_Sox14_1/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCTTTTMAWTWKMMTT---
---NNTAATTATAATTNNN
 A C T G A G T C A C G T A C G T A C G T A G C T G T A C C G T A C G T A A C G T C G T A A C G T G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C

IRF1/MA0050.2/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCTTTTMAWTWKMMTT-
TTTTACTTTCACTTTCACTTT
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C G T A G C T G T A C C G T A C G T A A C G T C G T A A C G T G T A C G T C A A C G T A C G T A C G T
G A C T A G C T A G C T A G C T C T G A A T G C C G A T A G C T A G C T A G T C C T G A A T G C G C A T G A C T G A C T A G T C C G T A A G T C G A C T G C A T G A C T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GCTTTTMAWTWKMMTT-
--CTTTCANTATGACTV
 A C T G A G T C A C G T A C G T A C G T A G C T G T A C C G T A C G T A A C G T C G T A A C G T G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A T G C G A C T A G C T A G C T A G T C G C T A C A G T C G A T G C T A A C G T A C T G G C T A T A G C G C A T T G A C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GCTTTTMAWTWKMMTT
---TTTTATTRGN---
 A C T G A G T C A C G T A C G T A C G T A G C T G T A C C G T A C G T A A C G T C G T A A C G T G T A C G T C A A C G T A C G T
A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T