Information for 4-ABABTTTAHAAGCAGG (Motif 4)

C G T A A T C G G T C A A G T C C G A T A C G T C G A T C T G A G T C A C G T A C T G A C T A G G T A C C G T A C T A G C T A G
Reverse Opposite:
A G T C A G T C A C G T A C T G A G T C A G C T C G A T C A G T A G C T C G T A G T C A C G T A T C A G A C G T T A C G C G A T
p-value:1e-9
log p-value:-2.094e+01
Information Content per bp:1.698
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif8.82%
Number of Background Sequences with motif68.5
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets36.7 +/- 32.5bp
Average Position of motif in Background49.5 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ABABTTTAHAAGCAGG
NAATTTTACGAGNTNN
 C G T A A T C G G T C A A G T C C G A T A C G T C G A T C T G A G T C A C G T A C T G A C T A G G T A C C G T A C T A G C T A G
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:ABABTTTAHAAGCAGG
--NTTTTACGAGN---
 C G T A A T C G G T C A A G T C C G A T A C G T C G A T C T G A G T C A C G T A C T G A C T A G G T A C C G T A C T A G C T A G
A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ABABTTTAHAAGCAGG
ANATTTTACGAGNNNN
 C G T A A T C G G T C A A G T C C G A T A C G T C G A T C T G A G T C A C G T A C T G A C T A G G T A C C G T A C T A G C T A G
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:ABABTTTAHAAGCAGG
---TTTTATTRGN---
 C G T A A T C G G T C A A G T C C G A T A C G T C G A T C T G A G T C A C G T A C T G A C T A G G T A C C G T A C T A G C T A G
A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:forward strand
Alignment:ABABTTTAHAAGCAGG
----WWTRTAAACAVG
 C G T A A T C G G T C A A G T C C G A T A C G T C G A T C T G A G T C A C G T A C T G A C T A G G T A C C G T A C T A G C T A G
A C G T A C G T A C G T A C G T C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

Foxo1/MA0480.1/Jaspar

Match Rank:6
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:ABABTTTAHAAGCAGG-
------TGTAAACAGGA
 C G T A A T C G G T C A A G T C C G A T A C G T C G A T C T G A G T C A C G T A C T G A C T A G G T A C C G T A C T A G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G A T G T C A C G T A C G T A A G T C C G T A T C A G T A C G G T C A

PB0129.1_Glis2_2/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ABABTTTAHAAGCAGG
--TCTTTANTAATANN
 C G T A A T C G G T C A A G T C C G A T A C G T C G A T C T G A G T C A C G T A C T G A C T A G G T A C C G T A C T A G C T A G
A C G T A C G T A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T

FOXP3/MA0850.1/Jaspar

Match Rank:8
Score:0.55
Offset:7
Orientation:forward strand
Alignment:ABABTTTAHAAGCAGG
-------GTAAACA--
 C G T A A T C G G T C A A G T C C G A T A C G T C G A T C T G A G T C A C G T A C T G A C T A G G T A C C G T A C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G A C T C G T A C T G A T C G A A G T C C T G A A C G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:ABABTTTAHAAGCAGG
----TTTCCCAGAAN-
 C G T A A T C G G T C A A G T C C G A T A C G T C G A T C T G A G T C A C G T A C T G A C T A G G T A C C G T A C T A G C T A G
A C G T A C G T A C G T A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G A C G T

PH0136.1_Phox2b/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ABABTTTAHAAGCAGG
CGGAATTAATTAATAGG
 A C G T C G T A A T C G G T C A A G T C C G A T A C G T C G A T C T G A G T C A C G T A C T G A C T A G G T A C C G T A C T A G C T A G
T A G C T C A G A C T G G C T A T C G A G A C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A A G C T C T G A A T C G A T C G