Information for 5-VCTTTCTAATCHH (Motif 12)

T C G A A G T C C G A T A C G T A C G T G T A C C A G T C G T A C G T A A C G T A T G C G A T C G A T C
Reverse Opposite:
C A T G C T A G T A C G C G T A C G A T A C G T G C T A A C T G C G T A C G T A C G T A A C T G A G C T
p-value:1e-4
log p-value:-1.105e+01
Information Content per bp:1.749
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif5.88%
Number of Background Sequences with motif104.8
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets39.3 +/- 24.9bp
Average Position of motif in Background50.0 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0174.1_Sox30_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--VCTTTCTAATCHH-
NCGTATTATAATCNTA
 A C G T A C G T T C G A A G T C C G A T A C G T A C G T G T A C C A G T C G T A C G T A A C G T A T G C G A T C G A T C A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

PB0079.1_Sry_1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--VCTTTCTAATCHH-
NANTATTATAATTNNN
 A C G T A C G T T C G A A G T C C G A T A C G T A C G T G T A C C A G T C G T A C G T A A C G T A T G C G A T C G A T C A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

PB0194.1_Zbtb12_2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-VCTTTCTAATCHH-
AGNGTTCTAATGANN
 A C G T T C G A A G T C C G A T A C G T A C G T G T A C C A G T C G T A C G T A A C G T A T G C G A T C G A T C A C G T
G C T A T C A G T A G C C A T G C A G T C A G T G T A C A G C T G C T A G C T A A G C T T A C G C T G A A C G T C G T A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:VCTTTCTAATCHH
-----YTAATCCY
 T C G A A G T C C G A T A C G T A C G T G T A C C A G T C G T A C G T A A C G T A T G C G A T C G A T C
A C G T A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-VCTTTCTAATCHH-
NNNTTTNTAATACNG
 A C G T T C G A A G T C C G A T A C G T A C G T G T A C C A G T C G T A C G T A A C G T A T G C G A T C G A T C A C G T
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

PB0069.1_Sox21_1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--VCTTTCTAATCHH-
NNTAATTATAATNANN
 A C G T A C G T T C G A A G T C C G A T A C G T A C G T G T A C C A G T C G T A C G T A A C G T A T G C G A T C G A T C A C G T
G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:VCTTTCTAATCHH-
----CCTAATCCGC
 T C G A A G T C C G A T A C G T A C G T G T A C C A G T C G T A C G T A A C G T A T G C G A T C G A T C A C G T
A C G T A C G T A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:VCTTTCTAATCHH
-CTTTGT------
 T C G A A G T C C G A T A C G T A C G T G T A C C A G T C G T A C G T A A C G T A T G C G A T C G A T C
A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:forward strand
Alignment:VCTTTCTAATCHH-
----GCTAATCCCC
 T C G A A G T C C G A T A C G T A C G T G T A C C A G T C G T A C G T A A C G T A T G C G A T C G A T C A C G T
A C G T A C G T A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.61
Offset:5
Orientation:forward strand
Alignment:VCTTTCTAATCHH
-----TTAATCCC
 T C G A A G T C C G A T A C G T A C G T G T A C C A G T C G T A C G T A A C G T A T G C G A T C G A T C
A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C