Information for 5-CATGGAAAATGTA (Motif 9)

A G T C C G T A A C G T A C T G A T C G C G T A C G T A C G T A C G T A A C G T A C T G A C G T C G T A
Reverse Opposite:
C G A T C G T A A G T C C G T A A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G A T A C T G
p-value:1e-9
log p-value:-2.279e+01
Information Content per bp:1.940
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.92%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.0 +/- 19.3bp
Average Position of motif in Background48.6 +/- 47.9bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFAT5/MA0606.1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CATGGAAAATGTA
NATGGAAAAN---
 A G T C C G T A A C G T A C T G A T C G C G T A C G T A C G T A C G T A A C G T A C T G A C G T C G T A
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CATGGAAAATGTA
AATGGAAAAT---
 A G T C C G T A A C G T A C T G A T C G C G T A C G T A C G T A C G T A A C G T A C T G A C G T C G T A
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:3
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CATGGAAAATGTA
--TGGAAAA----
 A G T C C G T A A C G T A C T G A T C G C G T A C G T A C G T A C G T A A C G T A C T G A C G T C G T A
A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CATGGAAAATGTA
AATGGAAAAT---
 A G T C C G T A A C G T A C T G A T C G C G T A C G T A C G T A C G T A A C G T A C T G A C G T C G T A
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CATGGAAAATGTA
NNTGGAAANN---
 A G T C C G T A A C G T A C T G A T C G C G T A C G T A C G T A C G T A A C G T A C T G A C G T C G T A
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CATGGAAAATGTA------
NANTGGAAAAANTGAGTCAN
 A C G T A G T C C G T A A C G T A C T G A T C G C G T A C G T A C G T A C G T A A C G T A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CATGGAAAATGTA-
WYATGCATWATGCAT
 A C G T A G T C C G T A A C G T A C T G A T C G C G T A C G T A C G T A C G T A A C G T A C T G A C G T C G T A A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CATGGAAAATGTA
-ATGCATAATTCA
 A G T C C G T A A C G T A C T G A T C G C G T A C G T A C G T A C G T A A C G T A C T G A C G T C G T A
A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

GFY(?)/Promoter/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CATGGAAAATGTA--
---GGGAATTGTAGT
 A G T C C G T A A C G T A C T G A T C G C G T A C G T A C G T A C G T A A C G T A C T G A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CATGGAAAATGTA-
TCATGAATWATTCAT
 A C G T A G T C C G T A A C G T A C T G A T C G C G T A C G T A C G T A C G T A A C G T A C T G A C G T C G T A A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T