Information for 4-SMYTYCAGAAGGG (Motif 6)

A T C G G T A C A G C T A C G T A G C T A G T C C G T A A C T G C G T A C G T A A C T G C T A G A C T G
Reverse Opposite:
A G T C A G T C A G T C A C G T A C G T A G T C A C G T A C T G T C G A C G T A C T G A A C T G A T G C
p-value:1e-11
log p-value:-2.731e+01
Information Content per bp:1.875
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif4.90%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 29.3bp
Average Position of motif in Background57.0 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:SMYTYCAGAAGGG--
---CACAGCAGGGGG
 A T C G G T A C A G C T A C G T A G C T A G T C C G T A A C T G C G T A C G T A A C T G C T A G A C T G A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0137.1_Irf3_2/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:SMYTYCAGAAGGG-----
----GGAGAAAGGTGCGA
 A T C G G T A C A G C T A C G T A G C T A G T C C G T A A C T G C G T A C G T A A C T G C T A G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:SMYTYCAGAAGGG
------NGAAGC-
 A T C G G T A C A G C T A C G T A G C T A G T C C G T A A C T G C G T A C G T A A C T G C T A G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:SMYTYCAGAAGGG
-ATGCCAGACN--
 A T C G G T A C A G C T A C G T A G C T A G T C C G T A A C T G C G T A C G T A A C T G C T A G A C T G
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

Gabpa/MA0062.2/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:forward strand
Alignment:SMYTYCAGAAGGG--
----CCGGAAGTGGC
 A T C G G T A C A G C T A C G T A G C T A G T C C G T A A C T G C G T A C G T A A C T G C T A G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T A G C T G A C A C T G A C T G T C G A G C T A T C A G G A C T T C A G T C A G T G A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:SMYTYCAGAAGGG----
--DCHCAGCAGGRGGCC
 A T C G G T A C A G C T A C G T A G C T A G T C C G T A A C T G C G T A C G T A A C T G C T A G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:SMYTYCAGAAGGG-
----CCAGACRSVB
 A T C G G T A C A G C T A C G T A G C T A G T C C G T A A C T G C G T A C G T A A C T G C T A G A C T G A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

ZBTB18/MA0698.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:SMYTYCAGAAGGG-
-CATCCAGATGTTC
 A T C G G T A C A G C T A C G T A G C T A G T C C G T A A C T G C G T A C G T A A C T G C T A G A C T G A C G T
A C G T G T A C C G T A A C G T T G A C G T A C C G T A A T C G G T C A A C G T C T A G G A C T C A G T A G T C

ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:SMYTYCAGAAGGG
---TCCAGATGTT
 A T C G G T A C A G C T A C G T A G C T A G T C C G T A A C T G C G T A C G T A A C T G C T A G A C T G
A C G T A C G T A C G T A C G T T G A C A G T C C G T A A T C G G T C A A C G T A T C G A G C T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:SMYTYCAGAAGGG-
----NNATAAGGNN
 A T C G G T A C A G C T A C G T A G C T A G T C C G T A A C T G C G T A C G T A A C T G C T A G A C T G A C G T
A C G T A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T