Information for 2-GGGAATTTCC (Motif 3)

A C T G C T A G A C T G C T G A G T C A C G A T A C G T A G C T A G T C G T A C
Reverse Opposite:
A C T G A C T G C T G A C G T A C G T A C A G T A G C T A G T C A G T C T A G C
p-value:1e-24
log p-value:-5.604e+01
Information Content per bp:1.848
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.02%
Number of Background Sequences with motif78.9
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets59.9 +/- 24.7bp
Average Position of motif in Background46.6 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.99
Offset:0
Orientation:reverse strand
Alignment:GGGAATTTCC
GGGAATTTCC
 A C T G C T A G A C T G C T G A G T C A C G A T A C G T A G C T A G T C G T A C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.97
Offset:0
Orientation:forward strand
Alignment:GGGAATTTCC
GGGAATTTCC
 A C T G C T A G A C T G C T G A G T C A C G A T A C G T A G C T A G T C G T A C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GGGAATTTCC
GGGGATTTCC
 A C T G C T A G A C T G C T G A G T C A C G A T A C G T A G C T A G T C G T A C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GGGAATTTCC-
NGGGGATTTCCC
 A C G T A C T G C T A G A C T G C T G A G T C A C G A T A C G T A G C T A G T C G T A C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GGGAATTTCC
GGGGATTTCC
 A C T G C T A G A C T G C T G A G T C A C G A T A C G T A G C T A G T C G T A C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GGGAATTTCC--
AGGGGATTCCCCT
 A C G T A C T G C T A G A C T G C T G A G T C A C G A T A C G T A G C T A G T C G T A C A C G T A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GGGAATTTCC--
GGGGATTCCCCC
 A C T G C T A G A C T G C T G A G T C A C G A T A C G T A G C T A G T C G T A C A C G T A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFATC1/MA0624.1/Jaspar

Match Rank:8
Score:0.70
Offset:3
Orientation:forward strand
Alignment:GGGAATTTCC---
---ATTTTCCATT
 A C T G C T A G A C T G C T G A G T C A C G A T A C G T A G C T A G T C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

NFKB1/MA0105.4/Jaspar

Match Rank:9
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GGGAATTTCC--
AGGGGATTCCCCT
 A C G T A C T G C T A G A C T G C T G A G T C A C G A T A C G T A G C T A G T C G T A C A C G T A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:10
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GGGAATTTCC---
---ATTTTCCATT
 A C T G C T A G A C T G C T G A G T C A C G A T A C G T A G C T A G T C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T