Information for 1-SCNCTSATTGGYCGRC (Motif 2)

T A G C A G T C C A T G A G T C A G C T A T G C C T G A A C G T A C G T A C T G A C T G A G T C G A T C T C A G T C A G T G A C
Reverse Opposite:
A C T G A G T C A G T C C T A G C T A G A G T C A G T C C G T A C G T A A G C T A T C G C T G A T C A G G T A C C T A G A T C G
p-value:1e-25
log p-value:-5.911e+01
Information Content per bp:1.642
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif7.76%
Number of Background Sequences with motif733.8
Percentage of Background Sequences with motif1.66%
Average Position of motif in Targets48.3 +/- 24.9bp
Average Position of motif in Background46.9 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.1/Jaspar

Match Rank:1
Score:0.87
Offset:3
Orientation:reverse strand
Alignment:SCNCTSATTGGYCGRC--
---CTGATTGGTCNATTT
 T A G C A G T C C A T G A G T C A G C T A T G C C T G A A C G T A C G T A C T G A C T G A G T C G A T C T C A G T C A G T G A C A C G T A C G T
A C G T A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.87
Offset:3
Orientation:reverse strand
Alignment:SCNCTSATTGGYCGRC
---CCGATTGGCT---
 T A G C A G T C C A T G A G T C A G C T A T G C C T G A A C G T A C G T A C T G A C T G A G T C G A T C T C A G T C A G T G A C
A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---SCNCTSATTGGYCGRC
AGAGTGCTGATTGGTCCA-
 A C G T A C G T A C G T T A G C A G T C C A T G A G T C A G C T A T G C C T G A A C G T A C G T A C T G A C T G A G T C G A T C T C A G T C A G T G A C
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.84
Offset:4
Orientation:reverse strand
Alignment:SCNCTSATTGGYCGRC
----TGATTGGCTANN
 T A G C A G T C C A T G A G T C A G C T A T G C C T G A A C G T A C G T A C T G A C T G A G T C G A T C T C A G T C A G T G A C
A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.71
Offset:7
Orientation:forward strand
Alignment:SCNCTSATTGGYCGRC
-------TTGGCA---
 T A G C A G T C C A T G A G T C A G C T A T G C C T G A A C G T A C G T A C T G A C T G A G T C G A T C T C A G T C A G T G A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:SCNCTSATTGGYCGRC
---TTGATTGN-----
 T A G C A G T C C A T G A G T C A G C T A T G C C T G A A C G T A C G T A C T G A C T G A G T C G A T C T C A G T C A G T G A C
A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.67
Offset:6
Orientation:reverse strand
Alignment:SCNCTSATTGGYCGRC
------NTTGGCANN-
 T A G C A G T C C A T G A G T C A G C T A T G C C T G A A C G T A C G T A C T G A C T G A G T C G A T C T C A G T C A G T G A C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

PH0109.1_Nkx1-1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-SCNCTSATTGGYCGRC
TGCGCTAATTAGTGGGA
 A C G T T A G C A G T C C A T G A G T C A G C T A T G C C T G A A C G T A C G T A C T G A C T G A G T C G A T C T C A G T C A G T G A C
C G A T T A C G G T A C T C A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T C A T G T A C G A C T G T C G A

PH0089.1_Isx/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-SCNCTSATTGGYCGRC
ACTCCTAATTAGTCGT-
 A C G T T A G C A G T C C A T G A G T C A G C T A T G C C T G A A C G T A C G T A C T G A C T G A G T C G A T C T C A G T C A G T G A C
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:SCNCTSATTGGYCGRC
---NTAATTGG-----
 T A G C A G T C C A T G A G T C A G C T A T G C C T G A A C G T A C G T A C T G A C T G A G T C G A T C T C A G T C A G T G A C
A C G T A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T