Information for 1-GGGAATTTCC (Motif 1)

A T C G A C T G A C T G G T C A T C G A C G A T A C G T A G C T A G T C A G T C
Reverse Opposite:
A C T G A C T G C T G A C G T A C G T A A G C T A C G T A G T C A G T C T A G C
p-value:1e-21
log p-value:-5.032e+01
Information Content per bp:1.871
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif22.95%
Number of Background Sequences with motif148.2
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets48.1 +/- 22.8bp
Average Position of motif in Background53.8 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.99
Offset:0
Orientation:reverse strand
Alignment:GGGAATTTCC
GGGAATTTCC
 A T C G A C T G A C T G G T C A T C G A C G A T A C G T A G C T A G T C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.96
Offset:0
Orientation:forward strand
Alignment:GGGAATTTCC
GGGAATTTCC
 A T C G A C T G A C T G G T C A T C G A C G A T A C G T A G C T A G T C A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GGGAATTTCC
GGGGATTTCC
 A T C G A C T G A C T G G T C A T C G A C G A T A C G T A G C T A G T C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GGGAATTTCC
GGGGATTTCC
 A T C G A C T G A C T G G T C A T C G A C G A T A C G T A G C T A G T C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-GGGAATTTCC-
NGGGGATTTCCC
 A C G T A T C G A C T G A C T G G T C A T C G A C G A T A C G T A G C T A G T C A G T C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGGAATTTCC--
AGGGGATTCCCCT
 A C G T A T C G A C T G A C T G G T C A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFATC1/MA0624.1/Jaspar

Match Rank:7
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GGGAATTTCC---
---ATTTTCCATT
 A T C G A C T G A C T G G T C A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GGGAATTTCC--
GGGGATTCCCCC
 A T C G A C T G A C T G G T C A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFATC3/MA0625.1/Jaspar

Match Rank:9
Score:0.70
Offset:3
Orientation:forward strand
Alignment:GGGAATTTCC---
---ATTTTCCATT
 A T C G A C T G A C T G G T C A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GGGAATTTCC----
----ATTTCCTGTN
 A T C G A C T G A C T G G T C A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G