Information for 9-AGTTCAGCHCCTTGBC (Motif 25)

G C T A C A T G C G A T G A C T A G T C G T C A A C T G A G T C G C T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G T A G C A G T C C G T A C G T A A C T G A C T G C G A T A C T G A G T C A C G T A C T G C T G A C G T A G T A C C G A T
p-value:1e-7
log p-value:-1.628e+01
Information Content per bp:1.818
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.8 +/- 23.2bp
Average Position of motif in Background80.6 +/- 10.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SP2/MA0516.1/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGTTCAGCHCCTTGBC
-GCCCCGCCCCCTCCC
 G C T A C A T G C G A T G A C T A G T C G T C A A C T G A G T C G C T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C
A C G T A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGTTCAGCHCCTTGBC-------
--TTCAGCACCATGGACAGCGCC
 G C T A C A T G C G A T G A C T A G T C G T C A A C T G A G T C G C T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:3
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AGTTCAGCHCCTTGBC--
----NTGCCCTTGGGCGN
 G C T A C A T G C G A T G A C T A G T C G T C A A C T G A G T C G C T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGTTCAGCHCCTTGBC-------
---TCAGCACCATGGACAGCTCC
 G C T A C A T G C G A T G A C T A G T C G T C A A C T G A G T C G C T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

PB0110.1_Bcl6b_2/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGTTCAGCHCCTTGBC
ATCCCCGCCCCTAAAA
 G C T A C A T G C G A T G A C T A G T C G T C A A C T G A G T C G C T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C
G T C A A C G T A T G C A T G C A G T C G A T C C T A G G A T C T G A C A T G C A G T C C G A T G C T A G T C A G C T A T G C A

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.52
Offset:10
Orientation:reverse strand
Alignment:AGTTCAGCHCCTTGBC---
----------NTTGGCANN
 G C T A C A T G C G A T G A C T A G T C G T C A A C T G A G T C G C T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.51
Offset:10
Orientation:reverse strand
Alignment:AGTTCAGCHCCTTGBC--
----------CTTGGCAA
 G C T A C A T G C G A T G A C T A G T C G T C A A C T G A G T C G C T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:AGTTCAGCHCCTTGBC--
-------NNACTTGCCTT
 G C T A C A T G C G A T G A C T A G T C G T C A A C T G A G T C G C T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AGTTCAGCHCCTTGBC
GGTCCCGCCC------
 G C T A C A T G C G A T G A C T A G T C G T C A A C T G A G T C G C T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C
A C T G A T C G A C G T A G T C A G T C A G T C C T A G A G T C A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:AGTTCAGCHCCTTGBC
----BNTGDCCTTG--
 G C T A C A T G C G A T G A C T A G T C G T C A A C T G A G T C G C T A A G T C A G T C A C G T A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T