Information for 12-TAGCCTATTA (Motif 21)

A C G T C G T A A C T G T A G C A G T C A C G T C G T A A C G T A C G T G T C A
Reverse Opposite:
A C G T G T C A C G T A C G A T C G T A A C T G A C T G A G T C A C G T C G T A
p-value:1e-8
log p-value:-1.969e+01
Information Content per bp:1.880
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.4 +/- 19.9bp
Average Position of motif in Background44.7 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TAGCCTATTA
BCAGACWA---
 A C G T A C G T C G T A A C T G T A G C A G T C A C G T C G T A A C G T A C G T G T C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TAGCCTATTA--
--NNCAATTANN
 A C G T C G T A A C T G T A G C A G T C A C G T C G T A A C G T A C G T G T C A A C G T A C G T
A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TAGCCTATTA-
---GCAATTAG
 A C G T C G T A A C T G T A G C A G T C A C G T C G T A A C G T A C G T G T C A A C G T
A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

BSX/MA0876.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TAGCCTATTA-
---CCAATTAA
 A C G T C G T A A C T G T A G C A G T C A C G T C G T A A C G T A C G T G T C A A C G T
A C G T A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TAGCCTATTA---
AAAAACCATTAAGG
 A C G T A C G T C G T A A C T G T A G C A G T C A C G T C G T A A C G T A C G T G T C A A C G T A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TAGCCTATTA-
-AAACMATTAN
 A C G T C G T A A C T G T A G C A G T C A C G T C G T A A C G T A C G T G T C A A C G T
A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

MSX2/MA0708.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TAGCCTATTA-
---CCAATTAA
 A C G T C G T A A C T G T A G C A G T C A C G T C G T A A C G T A C G T G T C A A C G T
A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TAGCCTATTA--
--GGCCATTAAC
 A C G T C G T A A C T G T A G C A G T C A C G T C G T A A C G T A C G T G T C A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Nobox/MA0125.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TAGCCTATTA
--ACCAATTA
 A C G T C G T A A C T G T A G C A G T C A C G T C G T A A C G T A C G T G T C A
A C G T A C G T T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A

PH0005.1_Barhl1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TAGCCTATTA----
AACAACCAATTAATTC
 A C G T A C G T A C G T C G T A A C T G T A G C A G T C A C G T C G T A A C G T A C G T G T C A A C G T A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C