Information for 6-CCGGGCCAAT (Motif 10)

A G T C T A G C T C A G T C A G T A C G T G A C T G A C C G T A T G C A A G C T
Reverse Opposite:
T C G A A C G T G C A T A C T G A C T G A T G C A G T C A G T C A T C G T C A G
p-value:1e-10
log p-value:-2.520e+01
Information Content per bp:1.657
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.76%
Number of Background Sequences with motif403.1
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets47.2 +/- 28.9bp
Average Position of motif in Background48.8 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.74
Offset:3
Orientation:forward strand
Alignment:CCGGGCCAAT---
---AGCCAATCGG
 A G T C T A G C T C A G T C A G T A C G T G A C T G A C C G T A T G C A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCGGGCCAAT--
ACTAGCCAATCA
 A G T C T A G C T C A G T C A G T A C G T G A C T G A C C G T A T G C A A G C T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCGGGCCAAT---
AAATGGACCAATCAG
 A C G T A C G T A G T C T A G C T C A G T C A G T A C G T G A C T G A C C G T A T G C A A G C T A C G T A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCGGGCCAAT
---TGCCAA-
 A G T C T A G C T C A G T C A G T A C G T G A C T G A C C G T A T G C A A G C T
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCGGGCCAAT
-CGTGCCAAG
 A G T C T A G C T C A G T C A G T A C G T G A C T G A C C G T A T G C A A G C T
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCGGGCCAAT--
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A G T C T A G C T C A G T C A G T A C G T G A C T G A C C G T A T G C A A G C T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCGGGCCAAT---------
-TGGACCAATCAGCACTCT
 A G T C T A G C T C A G T C A G T A C G T G A C T G A C C G T A T G C A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCGGGCCAAT
CTAGGCCT--
 A G T C T A G C T C A G T C A G T A C G T G A C T G A C C G T A T G C A A G C T
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCGGGCCAAT--
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A G T C T A G C T C A G T C A G T A C G T G A C T G A C C G T A T G C A A G C T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCGGGCCAAT-
-GGTGCCAAGT
 A G T C T A G C T C A G T C A G T A C G T G A C T G A C C G T A T G C A A G C T A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T