Information for 4-GCAGGSGGCGCTG (Motif 3)

A T C G G T A C C G T A A C T G T A C G T A G C T C A G A C T G A T G C A T C G G A T C C A G T A T C G
Reverse Opposite:
A T G C G T C A C T A G T A G C T A C G G T A C A G T C A T C G A T G C A G T C G C A T A C T G T A G C
p-value:1e-15
log p-value:-3.618e+01
Information Content per bp:1.723
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.18%
Number of Background Sequences with motif78.6
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets44.6 +/- 25.2bp
Average Position of motif in Background53.1 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GCAGGSGGCGCTG---
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G T A C G T A G C T C A G A C T G A T G C A T C G G A T C C A G T A T C G A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0076.1_Sp4_1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGSGGCGCTG--
NNNAAGGGGGCGGGNNN
 A C G T A C G T A T C G G T A C C G T A A C T G T A C G T A G C T C A G A C T G A T G C A T C G G A T C C A G T A T C G A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAGGSGGCGCTG---
-AAGGKGRCGCAGGCA
 A T C G G T A C C G T A A C T G T A C G T A G C T C A G A C T G A T G C A T C G G A T C C A G T A T C G A C G T A C G T A C G T
A C G T T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A

POL003.1_GC-box/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCAGGSGGCGCTG
AGGGGGCGGGGCTG
 A C G T A T C G G T A C C G T A A C T G T A C G T A G C T C A G A C T G A T G C A T C G G A T C C A G T A T C G
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GCAGGSGGCGCTG
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G T A C G T A G C T C A G A C T G A T G C A T C G G A T C C A G T A T C G
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

INSM1/MA0155.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCAGGSGGCGCTG
TGTCAGGGGGCG---
 A C G T A C G T A T C G G T A C C G T A A C T G T A C G T A G C T C A G A C T G A T G C A T C G G A T C C A G T A T C G
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCAGGSGGCGCTG
RGKGGGCGGAGC--
 A C G T A T C G G T A C C G T A A C T G T A C G T A G C T C A G A C T G A T G C A T C G G A T C C A G T A T C G
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAGGSGGCGCTG
GGGGGCGGGGC--
 A T C G G T A C C G T A A C T G T A C G T A G C T C A G A C T G A T G C A T C G G A T C C A G T A T C G
T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGGSGGCGCTG
DCHCAGCAGGRGGCC---
 A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A C T G T A C G T A G C T C A G A C T G A T G C A T C G G A T C C A G T A T C G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGSGGCGCTG
SDGCAGGTGCNS---
 A C G T A C G T A T C G G T A C C G T A A C T G T A C G T A G C T C A G A C T G A T G C A T C G G A T C C A G T A T C G
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T