Information for 3-DGAVGSTRGCCAT (Motif 7)

C A G T A C T G C T G A T C G A C T A G A T C G A G C T C T G A A C T G A G T C A T G C G T C A C G A T
Reverse Opposite:
C G T A A C G T A T C G A C T G A G T C A G C T T C G A A T G C A G T C A G C T A G C T A G T C G T C A
p-value:1e-12
log p-value:-2.799e+01
Information Content per bp:1.741
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.09%
Number of Background Sequences with motif38.1
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets46.9 +/- 22.9bp
Average Position of motif in Background48.4 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.59
Offset:7
Orientation:forward strand
Alignment:DGAVGSTRGCCAT----
-------GGCCATTAAC
 C A G T A C T G C T G A T C G A C T A G A T C G A G C T C T G A A C T G A G T C A T G C G T C A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:DGAVGSTRGCCAT--
TGACANARRCCAGRC
 C A G T A C T G C T G A T C G A C T A G A T C G A G C T C T G A A C T G A G T C A T G C G T C A C G A T A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

PB0050.1_Osr1_1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--DGAVGSTRGCCAT-
ATTTACAGTAGCAAAA
 A C G T A C G T C A G T A C T G C T G A T C G A C T A G A T C G A G C T C T G A A C T G A G T C A T G C G T C A C G A T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0051.1_Osr2_1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--DGAVGSTRGCCAT-
ATGTACAGTAGCAAAG
 A C G T A C G T C A G T A C T G C T G A T C G A C T A G A T C G A G C T C T G A A C T G A G T C A T G C G T C A C G A T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

YY2/MA0748.1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:DGAVGSTRGCCAT--
----GTCCGCCATTA
 C A G T A C T G C T G A T C G A C T A G A T C G A G C T C T G A A C T G A G T C A T G C G T C A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

YY1/MA0095.2/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:DGAVGSTRGCCAT----
-----GCNGCCATCTTG
 C A G T A C T G C T G A T C G A C T A G A T C G A G C T C T G A A C T G A G T C A T G C G T C A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:DGAVGSTRGCCAT
-------TGCCAA
 C A G T A C T G C T G A T C G A C T A G A T C G A G C T C T G A A C T G A G T C A T G C G T C A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:DGAVGSTRGCCAT-
-----CGTGCCAAG
 C A G T A C T G C T G A T C G A C T A G A T C G A G C T C T G A A C T G A G T C A T G C G T C A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-DGAVGSTRGCCAT
TGGCAGNCTGCCAG
 A C G T C A G T A C T G C T G A T C G A C T A G A T C G A G C T C T G A A C T G A G T C A T G C G T C A C G A T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:DGAVGSTRGCCAT---
----ACTAGCCAATCA
 C A G T A C T G C T G A T C G A C T A G A T C G A G C T C T G A A C T G A G T C A T G C G T C A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A