Information for 2-CWWGTBGCCCTGGGCT (Motif 3)

A G T C G C A T C G A T T A C G G A C T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C T A G A T C G T G A C A C G T
Reverse Opposite:
C G T A A C T G A T G C G A T C A G T C C G T A C T A G A C T G C T A G A G T C T G C A C T G A A T G C G C T A C G T A C T A G
p-value:1e-17
log p-value:-4.082e+01
Information Content per bp:1.688
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif44.6
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets45.0 +/- 25.2bp
Average Position of motif in Background48.6 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CWWGTBGCCCTGGGCT
----TGACCTTGACCT
 A G T C G C A T C G A T T A C G G A C T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C T A G A T C G T G A C A C G T
A C G T A C G T A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CWWGTBGCCCTGGGCT
----TGACCTTGACCT
 A G T C G C A T C G A T T A C G G A C T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C T A G A T C G T G A C A C G T
A C G T A C G T A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

Nr5a2/MA0505.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CWWGTBGCCCTGGGCT-
--GCTGACCTTGAACTN
 A G T C G C A T C G A T T A C G G A C T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C T A G A T C G T G A C A C G T A C G T
A C G T A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Zfx/MA0146.2/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CWWGTBGCCCTGGGCT-
---GGGGCCGAGGCCTG
 A G T C G C A T C G A T T A C G G A C T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C T A G A T C G T G A C A C G T A C G T
A C G T A C G T A C G T A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CWWGTBGCCCTGGGCT
----TGACCTTGAN--
 A G T C G C A T C G A T T A C G G A C T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C T A G A T C G T G A C A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CWWGTBGCCCTGGGCT
----TGACCTTGAV--
 A G T C G C A T C G A T T A C G G A C T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C T A G A T C G T G A C A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CWWGTBGCCCTGGGCT
--BNTGDCCTTG----
 A G T C G C A T C G A T T A C G G A C T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C T A G A T C G T G A C A C G T
A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CWWGTBGCCCTGGGCT
-----TGCCTGAGGCN
 A G T C G C A T C G A T T A C G G A C T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C T A G A T C G T G A C A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:9
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CWWGTBGCCCTGGGCT
-----NGCCTNAGGCN
 A G T C G C A T C G A T T A C G G A C T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C T A G A T C G T G A C A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CWWGTBGCCCTGGGCT--
----ATGCCCGGGCATGT
 A G T C G C A T C G A T T A C G G A C T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C T A G A T C G T G A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T