Information for 9-CGCGGCGCGC (Motif 11)

T A G C T C A G T A G C T A C G A T C G T A G C A T C G T A G C A T C G A T G C
Reverse Opposite:
A T C G T A G C A T C G T A G C A T C G T A G C A T G C A T C G A G T C A T C G
p-value:1e-3
log p-value:-7.444e+00
Information Content per bp:1.536
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif6.00%
Number of Background Sequences with motif960.0
Percentage of Background Sequences with motif3.51%
Average Position of motif in Targets47.5 +/- 24.8bp
Average Position of motif in Background49.9 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:CGCGGCGCGC-
---GGCGCGCT
 T A G C T C A G T A G C T A C G A T C G T A G C A T C G T A G C A T C G A T G C A C G T
A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CGCGGCGCGC------
-NTCGCGCGCCTTNNN
 T A G C T C A G T A G C T A C G A T C G T A G C A T C G T A G C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

PB0009.1_E2F3_1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGCGGCGCGC---
ATAAGGGCGCGCGAT
 A C G T A C G T T A G C T C A G T A G C T A C G A T C G T A G C A T C G T A G C A T C G A T G C A C G T A C G T A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

PB0199.1_Zfp161_2/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CGCGGCGCGC-
NNGCNCTGCGCGGC
 A C G T A C G T A C G T T A G C T C A G T A G C T A C G A T C G T A G C A T C G T A G C A T C G A T G C A C G T
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C

PB0095.1_Zfp161_1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGCGGCGCGC------
TGGCGCGCGCGCCTGA
 T A G C T C A G T A G C T A C G A T C G T A G C A T C G T A G C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C T A G A T G C T C A G G A T C C T A G A G T C C T A G A G T C C T A G G A T C G A T C G A C T C T A G C G T A

PB0052.1_Plagl1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGCGGCGCGC----
NNNGGGGCGCCCCCNN
 A C G T A C G T T A G C T C A G T A G C T A C G A T C G T A G C A T C G T A G C A T C G A T G C A C G T A C G T A C G T A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CGCGGCGCGC
--CGGAGC--
 T A G C T C A G T A G C T A C G A T C G T A G C A T C G T A G C A T C G A T G C
A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CGCGGCGCGC
GGGGGCGGGGCC-
 A C G T A C G T A C G T T A G C T C A G T A G C T A C G A T C G T A G C A T C G T A G C A T C G A T G C
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CGCGGCGCGC-----
AGCTCGGCGCCAAAAGC
 A C G T A C G T T A G C T C A G T A G C T A C G A T C G T A G C A T C G T A G C A T C G A T G C A C G T A C G T A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CGCGGCGCGC
RGKGGGCGGAGC--
 A C G T A C G T A C G T A C G T T A G C T C A G T A G C T A C G A T C G T A G C A T C G T A G C A T C G A T G C
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T