Information for 2-CCCTCTGCTGCCC (Motif 2)

A G T C A G T C A G T C A C G T A G T C A C G T A T C G A G T C A C G T A C T G A G T C G T A C T A G C
Reverse Opposite:
A C T G A C T G T A C G A G T C C G T A A C T G A T G C T C G A A C T G C G T A A C T G C T A G A C T G
p-value:1e-18
log p-value:-4.173e+01
Information Content per bp:1.888
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif19.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets39.5 +/- 24.4bp
Average Position of motif in Background40.2 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CCCTCTGCTGCCC-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G A G T C A C G T A C T G A G T C G T A C T A G C A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.65
Offset:-8
Orientation:forward strand
Alignment:--------CCCTCTGCTGCCC
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G A G T C A C G T A C T G A G T C G T A C T A G C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CCCTCTGCTGCCC-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G A G T C A C G T A C T G A G T C G T A C T A G C A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGCTGCCC
GACCCCCCGCTGCGC
 A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G A G T C A C G T A C T G A G T C G T A C T A G C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGCTGCCC
GACCCCCCGCTGTG-
 A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G A G T C A C G T A C T G A G T C G T A C T A G C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGCTGCCC
GGCCYCCTGCTGDGH
 A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G A G T C A C G T A C T G A G T C G T A C T A G C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCCTCTGCTGCCC
CCCCCTGCTGTG-
 A G T C A G T C A G T C A C G T A G T C A C G T A T C G A G T C A C G T A C T G A G T C G T A C T A G C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCTGCTGCCC
TGWCCTCARNTGACC
 A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G A G T C A C G T A C T G A G T C G T A C T A G C
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGCTGCCC
GACCCCCCGCTGTGC
 A C G T A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G A G T C A C G T A C T G A G T C G T A C T A G C
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCCTCTGCTGCCC
GCCATCTGTT----
 A C G T A G T C A G T C A G T C A C G T A G T C A C G T A T C G A G T C A C G T A C T G A G T C G T A C T A G C
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T A C G T