Information for 1-GCGCCAYCTRGTGGCH (Motif 1)

A T C G A G T C T A C G G T A C A G T C T G C A A G T C A G T C C G A T C T A G T A C G G A C T A C T G A C T G A G T C G A C T
Reverse Opposite:
C T G A T C A G G T A C G T A C C T G A A T G C G A T C C G T A A C T G T C A G A C G T C T A G A C T G A T G C T C A G T A G C
p-value:1e-79
log p-value:-1.821e+02
Information Content per bp:1.686
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif8.76%
Number of Background Sequences with motif149.4
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets46.6 +/- 25.3bp
Average Position of motif in Background47.2 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---GCGCCAYCTRGTGGCH-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A T C G A G T C T A C G G T A C A G T C T G C A A G T C A G T C C G A T C T A G T A C G G A C T A C T G A C T G A G T C G A C T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCAYCTRGTGGCH-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A T C G A G T C T A C G G T A C A G T C T G C A A G T C A G T C C G A T C T A G T A C G G A C T A C T G A C T G A G T C G A C T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.90
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCAYCTRGTGGCH
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C T A C G G T A C A G T C T G C A A G T C A G T C C G A T C T A G T A C G G A C T A C T G A C T G A G T C G A C T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GCGCCAYCTRGTGGCH
--GCCATCTGTT----
 A T C G A G T C T A C G G T A C A G T C T G C A A G T C A G T C C G A T C T A G T A C G G A C T A C T G A C T G A G T C G A C T
A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCGCCAYCTRGTGGCH
--ACCATCTGTT----
 A T C G A G T C T A C G G T A C A G T C T G C A A G T C A G T C C G A T C T A G T A C G G A C T A C T G A C T G A G T C G A C T
A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCGCCAYCTRGTGGCH
GCCGCCATCTTG-----
 A C G T A T C G A G T C T A C G G T A C A G T C T G C A A G T C A G T C C G A T C T A G T A C G G A C T A C T G A C T G A G T C G A C T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCGCCAYCTRGTGGCH
--GCCAGCTGBTNB--
 A T C G A G T C T A C G G T A C A G T C T G C A A G T C A G T C C G A T C T A G T A C G G A C T A C T G A C T G A G T C G A C T
A C G T A C G T T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCGCCAYCTRGTGGCH
GCNGCCATCTTG-----
 A C G T A T C G A G T C T A C G G T A C A G T C T G C A A G T C A G T C C G A T C T A G T A C G G A C T A C T G A C T G A G T C G A C T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCGCCAYCTRGTGGCH
--ACCACCTGTT----
 A T C G A G T C T A C G G T A C A G T C T G C A A G T C A G T C C G A T C T A G T A C G G A C T A C T G A C T G A G T C G A C T
A C G T A C G T G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T A C G T A C G T A C G T A C G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCGCCAYCTRGTGGCH
--RCCATMTGTT----
 A T C G A G T C T A C G G T A C A G T C T G C A A G T C A G T C C G A T C T A G T A C G G A C T A C T G A C T G A G T C G A C T
A C G T A C G T C T G A T G A C T G A C C G T A A C G T T G A C A G C T C T A G A C G T G A C T A C G T A C G T A C G T A C G T