Information for 9-CAAGTCTCTGAAA (Motif 4)

A G T C C G T A C G T A A C T G A C G T A T G C A C G T A G T C A C G T A C T G C G T A C G T A C T G A
Reverse Opposite:
A G C T A C G T A C G T A G T C C G T A A C T G C G T A A T C G G T C A A G T C C G A T C G A T A C T G
p-value:1e-10
log p-value:-2.510e+01
Information Content per bp:1.889
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.6 +/- 26.3bp
Average Position of motif in Background65.8 +/- 17.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CAAGTCTCTGAAA---
------ACTGAAACCA
 A G T C C G T A C G T A A C T G A C G T A T G C A C G T A G T C A C G T A C T G C G T A C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CAAGTCTCTGAAA---
------TTTGAAACCG
 A G T C C G T A C G T A A C T G A C G T A T G C A C G T A G T C A C G T A C T G C G T A C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:3
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CAAGTCTCTGAAA-
NTNATGCAAYMNNHTGMAAY
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A T G C A C G T A G T C A C G T A C T G C G T A C G T A C T G A A C G T
T G C A G C A T C G A T C G T A C A G T A C T G G T A C C G T A C T G A A G C T G T C A A C T G C T A G G T C A C G A T A C T G G T A C T G C A C G T A A G C T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CAAGTCTCTGAAA--
---GNCTATAAAAGG
 A G T C C G T A C G T A A C T G A C G T A T G C A C G T A G T C A C G T A C T G C G T A C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAAGTCTCTGAAA----
-AAACCTCGTAAAATTT
 A G T C C G T A C G T A A C T G A C G T A T G C A C G T A G T C A C G T A C T G C G T A C G T A C T G A A C G T A C G T A C G T A C G T
A C G T G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAAGTCTCTGAAA
-NTTTCTNAGAAA
 A G T C C G T A C G T A A C T G A C G T A T G C A C G T A G T C A C G T A C T G C G T A C G T A C T G A
A C G T C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAAGTCTCTGAAA----
-AAAGCTCGTAAAATTT
 A G T C C G T A C G T A A C T G A C G T A T G C A C G T A G T C A C G T A C T G C G T A C G T A C T G A A C G T A C G T A C G T A C G T
A C G T G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CAAGTCTCTGAAA-
----CCTTTGATGT
 A G T C C G T A C G T A A C T G A C G T A T G C A C G T A G T C A C G T A C T G C G T A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

PB0013.1_Eomes_1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CAAGTCTCTGAAA---
GAAAAGGTGTGAAAATT
 A C G T A G T C C G T A C G T A A C T G A C G T A T G C A C G T A G T C A C G T A C T G C G T A C G T A C T G A A C G T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CAAGTCTCTGAAA--
----GCTCGTAAAAA
 A G T C C G T A C G T A A C T G A C G T A T G C A C G T A G T C A C G T A C T G C G T A C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A