Information for 18-AGGTTAAAGCCAG (Motif 18)

C G T A A C T G A C T G A G C T A C G T C G T A C G T A C G T A A T C G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A T G C A C G T A C G T A C G T C G T A C T G A A G T C G T A C A C G T
p-value:1e-5
log p-value:-1.367e+01
Information Content per bp:1.943
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 26.6bp
Average Position of motif in Background22.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGTTAAAGCCAG
AGGTCAAGGTCA-
 C G T A A C T G A C T G A G C T A C G T C G T A C G T A C G T A A T C G A G T C A G T C C G T A A C T G
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGTTAAAGCCAG
AGGTCAAGGTCA-
 C G T A A C T G A C T G A G C T A C G T C G T A C G T A C G T A A T C G A G T C A G T C C G T A A C T G
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:AGGTTAAAGCCAG---
------ATGCCAGACN
 C G T A A C T G A C T G A G C T A C G T C G T A C G T A C G T A A T C G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Nr5a2/MA0505.1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGGTTAAAGCCAG-
AAGTTCAAGGTCAGC
 A C G T C G T A A C T G A C T G A G C T A C G T C G T A C G T A C G T A A T C G A G T C A G T C C G T A A C T G A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGGTTAAAGCCAG
AGGTGNCAGACAG
 C G T A A C T G A C T G A G C T A C G T C G T A C G T A C G T A A T C G A G T C A G T C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AGGTTAAAGCCAG--
NAAACCGGTTNNAACCGGTT
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A G C T A C G T C G T A C G T A C G T A A T C G A G T C A G T C C G T A A C T G A C G T A C G T
T G A C T C G A C T G A C T G A A T G C G A T C C T A G T A C G G A C T G A C T G A T C T C G A C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T

TCF7L2/MA0523.1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGGTTAAAGCCAG
AAAGATCAAAGGAA-
 A C G T A C G T C G T A A C T G A C T G A G C T A C G T C G T A C G T A C G T A A T C G A G T C A G T C C G T A A C T G
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGGTTAAAGCCAG
ACATCAAAGGNA-
 C G T A A C T G A C T G A G C T A C G T C G T A C G T A C G T A A T C G A G T C A G T C C G T A A C T G
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGGTTAAAGCCAG
ACATCAAAGG---
 C G T A A C T G A C T G A G C T A C G T C G T A C G T A C G T A A T C G A G T C A G T C C G T A A C T G
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---AGGTTAAAGCCAG-
TGATTGTTAACAGTTGG
 A C G T A C G T A C G T C G T A A C T G A C T G A G C T A C G T C G T A C G T A C G T A A T C G A G T C A G T C C G T A A C T G A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G