Information for 5-TGGCTATGTTAAACCC (Motif 14)

A C G T A C T G A C T G A T G C C A G T G C T A A C G T A C T G C G A T A C G T C T G A G C T A C G T A T A G C G T A C G T A C
Reverse Opposite:
A C T G A C T G A C T G G C A T C A G T A G C T C G T A G C T A T G A C C G T A C G A T G C T A A T C G A G T C A G T C C G T A
p-value:1e-7
log p-value:-1.797e+01
Information Content per bp:1.710
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.0 +/- 22.4bp
Average Position of motif in Background24.8 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGGCTATGTTAAACCC
TTGGCA-----------
 A C G T A C G T A C T G A C T G A T G C C A G T G C T A A C G T A C T G C G A T A C G T C T G A G C T A C G T A T A G C G T A C G T A C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGCTATGTTAAACCC
NTTGGCANN---------
 A C G T A C G T A C G T A C T G A C T G A T G C C A G T G C T A A C G T A C T G C G A T A C G T C T G A G C T A C G T A T A G C G T A C G T A C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----TGGCTATGTTAAACCC
TGATTGGCTANN--------
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A T G C C A G T G C T A A C G T A C T G C G A T A C G T C T G A G C T A C G T A T A G C G T A C G T A C
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0059.1_Six6_1/Jaspar

Match Rank:4
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---TGGCTATGTTAAACCC
AATAGGGTATCATATAT--
 A C G T A C G T A C G T A C G T A C T G A C T G A T G C C A G T G C T A A C G T A C T G C G A T A C G T C T G A G C T A C G T A T A G C G T A C G T A C
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTATGTTAAACCC
AAGGATATNTN------
 A C G T A C G T A C T G A C T G A T G C C A G T G C T A A C G T A C T G C G A T A C G T C T G A G C T A C G T A T A G C G T A C G T A C
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:6
Score:0.48
Offset:2
Orientation:forward strand
Alignment:TGGCTATGTTAAACCC
--GCTATTTTTAGC--
 A C G T A C T G A C T G A T G C C A G T G C T A A C G T A C T G C G A T A C G T C T G A G C T A C G T A T A G C G T A C G T A C
A C G T A C G T C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.48
Offset:-4
Orientation:reverse strand
Alignment:----TGGCTATGTTAAACCC
NNCGTTGCTATGGNN-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A T G C C A G T G C T A A C G T A C T G C G A T A C G T C T G A G C T A C G T A T A G C G T A C G T A C
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.47
Offset:-2
Orientation:reverse strand
Alignment:--TGGCTATGTTAAACCC
CTTGGCAA----------
 A C G T A C G T A C G T A C T G A C T G A T G C C A G T G C T A A C G T A C T G C G A T A C G T C T G A G C T A C G T A T A G C G T A C G T A C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---TGGCTATGTTAAACCC
NNTTGGCANN---------
 A C G T A C G T A C G T A C G T A C T G A C T G A T G C C A G T G C T A A C G T A C T G C G A T A C G T C T G A G C T A C G T A T A G C G T A C G T A C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:10
Score:0.47
Offset:1
Orientation:forward strand
Alignment:TGGCTATGTTAAACCC
-CCGTATTATAAACAA
 A C G T A C T G A C T G A T G C C A G T G C T A A C G T A C T G C G A T A C G T C T G A G C T A C G T A T A G C G T A C G T A C
A C G T G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A