Information for 5-YCAGTGGTAA (Motif 2)

A G T C A G T C G T C A A C T G A C G T A C T G A C T G A G C T C G T A C G T A
Reverse Opposite:
A C G T C G A T C T G A A G T C A G T C G T C A A G T C C A G T C T A G T C A G
p-value:1e-18
log p-value:-4.200e+01
Information Content per bp:1.814
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif22.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets53.5 +/- 17.2bp
Average Position of motif in Background56.4 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:YCAGTGGTAA
GCTGTGGTTT
 A G T C A G T C G T C A A C T G A C G T A C T G A C T G A G C T C G T A C G T A
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--YCAGTGGTAA-----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A G T C A G T C G T C A A C T G A C G T A C T G A C T G A G C T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

NFAT5/MA0606.1/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:YCAGTGGTAA--
--NATGGAAAAN
 A G T C A G T C G T C A A C T G A C G T A C T G A C T G A G C T C G T A C G T A A C G T A C G T
A C G T A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-YCAGTGGTAA-
NNHTGTGGTTWN
 A C G T A G T C A G T C G T C A A C T G A C G T A C T G A C T G A G C T C G T A C G T A A C G T
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:YCAGTGGTAA--
--AATGGAAAAT
 A G T C A G T C G T C A A C T G A C G T A C T G A C T G A G C T C G T A C G T A A C G T A C G T
A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:YCAGTGGTAA----
---CAGGTAAGTAT
 A G T C A G T C G T C A A C T G A C G T A C T G A C T G A G C T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:YCAGTGGTAA--
--CSTGGGAAAD
 A G T C A G T C G T C A A C T G A C G T A C T G A C T G A G C T C G T A C G T A A C G T A C G T
A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:YCAGTGGTAA
--AGRGGTCA
 A G T C A G T C G T C A A C T G A C G T A C T G A C T G A G C T C G T A C G T A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:YCAGTGGTAA-
-CTGTGGTTTN
 A G T C A G T C G T C A A C T G A C G T A C T G A C T G A G C T C G T A C G T A A C G T
A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

PB0057.1_Rxra_1/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--YCAGTGGTAA-----
NTNNNGGGGTCANGNNN
 A C G T A C G T A G T C A G T C G T C A A C T G A C G T A C T G A C T G A G C T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A