Information for 6-CAGGTGKCGCTGY (Motif 3)

A G T C C G T A C T A G C T A G A G C T C A T G A C G T A T G C C T A G G A T C A C G T C T A G A G T C
Reverse Opposite:
T C A G A G T C C G T A C T A G A G T C A T C G G T C A G T A C C T G A A G T C A G T C C G A T C T A G
p-value:1e-17
log p-value:-4.109e+01
Information Content per bp:1.737
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif24.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets51.7 +/- 26.3bp
Average Position of motif in Background47.5 +/- 40.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGGTGKCGCTGY
GTCATGCHTGRCTGS
 A C G T A C G T A G T C C G T A C T A G C T A G A G C T C A T G A C G T A T G C C T A G G A T C A C G T C T A G A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTGKCGCTGY
NNCAGGTGNN-----
 A C G T A C G T A G T C C G T A C T A G C T A G A G C T C A T G A C G T A T G C C T A G G A T C A C G T C T A G A G T C
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGGTGKCGCTGY
AACAGGTGT------
 A C G T A C G T A G T C C G T A C T A G C T A G A G C T C A T G A C G T A T G C C T A G G A T C A C G T C T A G A G T C
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAGGTGKCGCTGY
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A G T C C G T A C T A G C T A G A G C T C A T G A C G T A T G C C T A G G A T C A C G T C T A G A G T C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0117.1_Eomes_2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAGGTGKCGCTGY
GCGGAGGTGTCGCCTC
 A C G T A C G T A C G T A G T C C G T A C T A G C T A G A G C T C A T G A C G T A T G C C T A G G A T C A C G T C T A G A G T C
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGGTGKCGCTGY
VCAGGTRDRY----
 A C G T A G T C C G T A C T A G C T A G A G C T C A T G A C G T A T G C C T A G G A T C A C G T C T A G A G T C
T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C A C G T A C G T A C G T A C G T

ID4/MA0824.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTGKCGCTGY
GACAGGTGTN-----
 A C G T A C G T A G T C C G T A C T A G C T A G A G C T C A T G A C G T A T G C C T A G G A T C A C G T C T A G A G T C
C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A A C G T A C G T A C G T A C G T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTGKCGCTGY
NNCAGGTGTN-----
 A C G T A C G T A G T C C G T A C T A G C T A G A G C T C A T G A C G T A T G C C T A G G A T C A C G T C T A G A G T C
G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.58
Offset:8
Orientation:forward strand
Alignment:CAGGTGKCGCTGY-
--------GCTGTG
 A G T C C G T A C T A G C T A G A G C T C A T G A C G T A T G C C T A G G A T C A C G T C T A G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

ZEB1/MA0103.2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAGGTGKCGCTGY
CAGGTGAGG----
 A G T C C G T A C T A G C T A G A G C T C A T G A C G T A T G C C T A G G A T C A C G T C T A G A G T C
A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T A C G T A C G T