Information for 11-TTTTAAAAAC (Motif 11)

C A G T A G C T A C G T G C A T G C T A T C G A C G T A G C T A G T C A A G T C
Reverse Opposite:
T C A G C A G T C A G T G C A T A G C T C G A T C G T A G T C A T C G A G C T A
p-value:1e-7
log p-value:-1.613e+01
Information Content per bp:1.677
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.69%
Number of Background Sequences with motif864.5
Percentage of Background Sequences with motif1.82%
Average Position of motif in Targets52.9 +/- 30.4bp
Average Position of motif in Background50.8 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0187.1_Tcf7_2/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAAAC--
CCGTATTATAAACAA
 A C G T A C G T A C G T C A G T A G C T A C G T G C A T G C T A T C G A C G T A G C T A G T C A A G T C A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAAAC
CGGTTTCAAA---
 A C G T A C G T A C G T C A G T A G C T A C G T G C A T G C T A T C G A C G T A G C T A G T C A A G T C
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAAAC
NATTCAAAT--
 A C G T C A G T A G C T A C G T G C A T G C T A T C G A C G T A G C T A G T C A A G T C
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTTTAAAAAC
GTCGTAAAAA-
 A C G T C A G T A G C T A C G T G C A T G C T A T C G A C G T A G C T A G T C A A G T C
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTTTAAAAAC
ATATTAATTAA
 A C G T C A G T A G C T A C G T G C A T G C T A T C G A C G T A G C T A G T C A A G T C
C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTTTAAAAAC
CCTTTTATAGNC
 A C G T A C G T C A G T A G C T A C G T G C A T G C T A T C G A C G T A G C T A G T C A A G T C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

HOXC13/MA0907.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTTTAAAAAC
GCTCGTAAAAA-
 A C G T A C G T C A G T A G C T A C G T G C A T G C T A T C G A C G T A G C T A G T C A A G T C
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTTTAAAAAC
GGTCGTAAAAA-
 A C G T A C G T C A G T A G C T A C G T G C A T G C T A T C G A C G T A G C T A G T C A A G T C
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTTTAAAAAC
AGTCGTAAAAA-
 A C G T A C G T C A G T A G C T A C G T G C A T G C T A T C G A C G T A G C T A G T C A A G T C
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTTTAAAAAC
GTCGTAAAAT-
 A C G T C A G T A G C T A C G T G C A T G C T A T C G A C G T A G C T A G T C A A G T C
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T