Information for 7-TTTTAAAADT (Motif 11)

C G A T C A G T C G A T G A C T C G T A G T C A T G C A C G T A C T A G A C G T
Reverse Opposite:
T G C A G A T C C G A T A C G T C A G T G C A T C T G A G C T A G T C A G C T A
p-value:1e-7
log p-value:-1.711e+01
Information Content per bp:1.656
Number of Target Sequences with motif100.0
Percentage of Target Sequences with motif11.75%
Number of Background Sequences with motif3185.2
Percentage of Background Sequences with motif6.66%
Average Position of motif in Targets55.7 +/- 27.6bp
Average Position of motif in Background49.7 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAADT
CGGTTTCAAA---
 A C G T A C G T A C G T C G A T C A G T C G A T G A C T C G T A G T C A T G C A C G T A C T A G A C G T
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAADT
NATTCAAAT--
 A C G T C G A T C A G T C G A T G A C T C G T A G T C A T G C A C G T A C T A G A C G T
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTTTAAAADT
NNTTTTTCTTATNT
 A C G T A C G T A C G T A C G T C G A T C A G T C G A T G A C T C G T A G T C A T G C A C G T A C T A G A C G T
A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T

PB0145.1_Mafb_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAADT--
CAATTGCAAAAATAT
 A C G T A C G T A C G T C G A T C A G T C G A T G A C T C G T A G T C A T G C A C G T A C T A G A C G T A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTTTAAAADT
TTTTATTRGN
 C G A T C A G T C G A T G A C T C G T A G T C A T G C A C G T A C T A G A C G T
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXD11/MA0908.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAADT
NTTTTACGAC-
 A C G T C G A T C A G T C G A T G A C T C G T A G T C A T G C A C G T A C T A G A C G T
C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAADT
NTTTTACGAGN
 A C G T C G A T C A G T C G A T G A C T C G T A G T C A T G C A C G T A C T A G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PB0187.1_Tcf7_2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAADT--
CCGTATTATAAACAA
 A C G T A C G T A C G T C G A T C A G T C G A T G A C T C G T A G T C A T G C A C G T A C T A G A C G T A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTAAAADT
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T C G A T G A C T C G T A G T C A T G C A C G T A C T A G A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTAAAADT
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T C G A T G A C T C G T A G T C A T G C A C G T A C T A G A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T