Information for 5-GCCATTGCGT (Motif 10)

C A T G A G T C G T A C T C G A C A G T A C G T A C T G A G T C A C T G C G A T
Reverse Opposite:
G C T A T G A C T C A G G T A C G T C A G T C A A G C T A C T G C T A G G T A C
p-value:1e-9
log p-value:-2.212e+01
Information Content per bp:1.693
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.41%
Number of Background Sequences with motif883.4
Percentage of Background Sequences with motif1.85%
Average Position of motif in Targets42.1 +/- 22.5bp
Average Position of motif in Background49.9 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GCCATTGCGT---
NNNCCATTGTGTNAN
 A C G T A C G T C A T G A G T C G T A C T C G A C A G T A C G T A C T G A G T C A C T G C G A T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT-
-CCATTGTTYB
 C A T G A G T C G T A C T C G A C A G T A C G T A C T G A G T C A C T G C G A T A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCCATTGCGT
NCCATTGTTY
 C A T G A G T C G T A C T C G A C A G T A C G T A C T G A G T C A C T G C G A T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT
-CCTTTGTT-
 C A T G A G T C G T A C T C G A C A G T A C G T A C T G A G T C A C T G C G A T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

YY2/MA0748.1/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCCATTGCGT
GTCCGCCATTA---
 A C G T A C G T A C G T A C G T C A T G A G T C G T A C T C G A C A G T A C G T A C T G A G T C A C T G C G A T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT
-CCATTGTTC
 C A T G A G T C G T A C T C G A C A G T A C G T A C T G A G T C A C T G C G A T
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCCATTGCGT
AGCCAATCGG-
 A C G T C A T G A G T C G T A C T C G A C A G T A C G T A C T G A G T C A C T G C G A T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT
-CCWTTGTY-
 C A T G A G T C G T A C T C G A C A G T A C G T A C T G A G T C A C T G C G A T
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCCATTGCGT---
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T C A T G A G T C G T A C T C G A C A G T A C G T A C T G A G T C A C T G C G A T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT-
-CCATTGTTTT
 C A T G A G T C G T A C T C G A C A G T A C G T A C T G A G T C A C T G C G A T A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T