Information for 17-CTGGCAGCTGCCA (Motif 23)

A T G C A C G T A C T G A T C G A G T C C G T A A C T G A G T C A C G T A C T G A T G C A G T C C G T A
Reverse Opposite:
A C G T A C T G A T C G A G T C C G T A A C T G A G T C C G A T A C T G A T G C A G T C C G T A A T C G
p-value:1e-6
log p-value:-1.493e+01
Information Content per bp:1.913
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets67.1 +/- 25.1bp
Average Position of motif in Background75.5 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TGIF1/MA0796.1/Jaspar

Match Rank:1
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:CTGGCAGCTGCCA
-TGACAGCTGTCA
 A T G C A C G T A C T G A T C G A G T C C G T A A C T G A G T C A C G T A C T G A T G C A G T C C G T A
A C G T G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A

TGIF2/MA0797.1/Jaspar

Match Rank:2
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CTGGCAGCTGCCA
-TGACAGCTGTCA
 A T G C A C G T A C T G A T C G A G T C C G T A A C T G A G T C A C G T A C T G A T G C A G T C C G T A
A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A

PKNOX1/MA0782.1/Jaspar

Match Rank:3
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CTGGCAGCTGCCA
-TGACACCTGTCA
 A T G C A C G T A C T G A T C G A G T C C G T A A C T G A G T C A C G T A C T G A T G C A G T C C G T A
A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A

PKNOX2/MA0783.1/Jaspar

Match Rank:4
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CTGGCAGCTGCCA
-TGACAGGTGTCA
 A T G C A C G T A C T G A T C G A G T C C G T A A C T G A G T C A C G T A C T G A T G C A G T C C G T A
A C G T C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:5
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CTGGCAGCTGCCA-
--NVCAGCTGBBNN
 A T G C A C G T A C T G A T C G A G T C C G T A A C T G A G T C A C G T A C T G A T G C A G T C C G T A A C G T
A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CTGGCAGCTGCCA
VNAVCAGCTGGC-
 A T G C A C G T A C T G A T C G A G T C C G T A A C T G A G T C A C G T A C T G A T G C A G T C C G T A
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTGGCAGCTGCCA---
CTCAGCAGCTGCTACTG
 A C G T A T G C A C G T A C T G A T C G A G T C C G T A A C T G A G T C A C G T A C T G A T G C A G T C C G T A A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTGGCAGCTGCCA
NNAGCAGCTGCT-
 A T G C A C G T A C T G A T C G A G T C C G T A A C T G A G T C A C G T A C T G A T G C A G T C C G T A
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CTGGCAGCTGCCA
--GACAGCTGCAG
 A T G C A C G T A C T G A T C G A G T C C G T A A C T G A G T C A C G T A C T G A T G C A G T C C G T A
A C G T A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTGGCAGCTGCCA
-NNACAGCTGC--
 A T G C A C G T A C T G A T C G A G T C C G T A A C T G A G T C A C G T A C T G A T G C A G T C C G T A
A C G T C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T