Information for 11-CCATAAAGTTGTT (Motif 17)

G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T C A T G A C G T A C G T
Reverse Opposite:
C G T A C G T A G T A C C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A C T G A C T G
p-value:1e-9
log p-value:-2.148e+01
Information Content per bp:1.937
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.6 +/- 27.3bp
Average Position of motif in Background38.3 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCATAAAGTTGTT
AAGCCATAAAA-----
 A C G T A C G T A C G T G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T C A T G A C G T A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCATAAAGTTGTT
ACGGCCATAAAATTAAT
 A C G T A C G T A C G T A C G T G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T C A T G A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCATAAAGTTGTT
GCAATAAAA-----
 A C G T G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T C A T G A C G T A C G T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCATAAAGTTGTT
NGYCATAAAWCH---
 A C G T A C G T G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T C A T G A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCATAAAGTTGTT
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T C A T G A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCATAAAGTTGTT
GTCATAAAAN----
 A C G T G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T C A T G A C G T A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCATAAAGTTGTT
AAAGGTAATAAAATTT--
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T C A T G A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCATAAAGTTGTT
CTACCAATAAAATTCT-
 A C G T A C G T A C G T A C G T G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T C A T G A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCATAAAGTTGTT
AGAGCCATAAAATTCG-
 A C G T A C G T A C G T A C G T G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T C A T G A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCATAAAGTTGTT
CCAATAAAAA----
 A C G T G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T C A T G A C G T A C G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T