Information for 2-AGGAGGGGACACT (Motif 3)

C G T A A C T G A T C G C G T A A C T G A C T G A C T G T C A G G T C A A G T C C T G A A G T C A C G T
Reverse Opposite:
C G T A A C T G A G C T A C T G A C G T A G T C A G T C A G T C A G T C A C G T A T G C A G T C A C G T
p-value:1e-14
log p-value:-3.293e+01
Information Content per bp:1.892
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.4 +/- 21.8bp
Average Position of motif in Background39.1 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGGAGGGGACACT
CACAGCAGGGGG----
 A C G T A C G T A C G T C G T A A C T G A T C G C G T A A C T G A C T G A C T G T C A G G T C A A G T C C T G A A G T C A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGGAGGGGACACT
--CCAGGAACAG-
 C G T A A C T G A T C G C G T A A C T G A C T G A C T G T C A G G T C A A G T C C T G A A G T C A C G T
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGGAGGGGACACT---
GGCGAGGGGTCAAGGGC
 A C G T C G T A A C T G A T C G C G T A A C T G A C T G A C T G T C A G G T C A A G T C C T G A A G T C A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AGGAGGGGACACT-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A T C G C G T A A C T G A C T G A C T G T C A G G T C A A G T C C T G A A G T C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGGAGGGGACACT
DCHCAGCAGGRGGCC--
 A C G T A C G T A C G T A C G T C G T A A C T G A T C G C G T A A C T G A C T G A C T G T C A G G T C A A G T C C T G A A G T C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGGAGGGGACACT
GGGGGCGGGGC----
 A C G T A C G T C G T A A C T G A T C G C G T A A C T G A C T G A C T G T C A G G T C A A G T C C T G A A G T C A C G T
T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C A C G T A C G T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGGAGGGGACACT
GGGCGGGAAGG--
 C G T A A C T G A T C G C G T A A C T G A C T G A C T G T C A G G T C A A G T C C T G A A G T C A C G T
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AGGAGGGGACACT----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T C G T A A C T G A T C G C G T A A C T G A C T G A C T G T C A G G T C A A G T C C T G A A G T C A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0107.1_Ascl2_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----AGGAGGGGACACT
NATNGGGNGGGGANAN-
 A C G T A C G T A C G T A C G T C G T A A C T G A T C G C G T A A C T G A C T G A C T G T C A G G T C A A G T C C T G A A G T C A C G T
C T G A T G C A G A C T T C G A C T A G C T A G T C A G G A T C A C T G C A T G A T C G C A T G G C T A A C G T C T G A T A C G A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----AGGAGGGGACACT--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A T C G C G T A A C T G A C T G A C T G T C A G G T C A A G T C C T G A A G T C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T