Information for 11-CTGGCAGGCAGGAGAG (Motif 26)

A T G C G A C T A C T G A T C G A G T C C G T A C T A G A C T G A G T C C G T A T A C G A T C G C T G A C T A G C G T A C T A G
Reverse Opposite:
A G T C G C A T A G T C A G C T A T G C A T G C C G A T A C T G A G T C A G T C A C G T A C T G A T G C A G T C C T G A A T C G
p-value:1e-9
log p-value:-2.177e+01
Information Content per bp:1.824
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif10.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets45.4 +/- 31.8bp
Average Position of motif in Background52.5 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-2.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGGCAGGCAGGAGAG
TTGCCAAG--------
 A T G C G A C T A C T G A T C G A G T C C G T A C T A G A C T G A G T C C G T A T A C G A T C G C T G A C T A G C G T A C T A G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGGCAGGAGAG
AGGTGNCAGACAG-----
 A C G T A C G T A T G C G A C T A C T G A T C G A G T C C G T A C T A G A C T G A G T C C G T A T A C G A T C G C T G A C T A G C G T A C T A G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTGGCAGGCAGGAGAG
SCTGTCAVTCAV-----
 A C G T A T G C G A C T A C T G A T C G A G T C C G T A C T A G A C T G A G T C C G T A T A C G A T C G C T G A C T A G C G T A C T A G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTGGCAGGCAGGAGAG
-TBGCACGCAA-----
 A T G C G A C T A C T G A T C G A G T C C G T A C T A G A C T G A G T C C G T A T A C G A T C G C T G A C T A G C G T A C T A G
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGGCAGGAGAG
VBTGWCAGCB-------
 A C G T A T G C G A C T A C T G A T C G A G T C C G T A C T A G A C T G A G T C C G T A T A C G A T C G C T G A C T A G C G T A C T A G
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTGGCAGGCAGGAGAG
AGGTGHCAGACA------
 A C G T A C G T A T G C G A C T A C T G A T C G A G T C C G T A C T A G A C T G A G T C C G T A T A C G A T C G C T G A C T A G C G T A C T A G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTGGCAGGCAGGAGAG
NCTGTCAATCAN-----
 A C G T A T G C G A C T A C T G A T C G A G T C C G T A C T A G A C T G A G T C C G T A T A C G A T C G C T G A C T A G C G T A C T A G
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGGCAGGAGAG
NTTGGCANN--------
 A C G T A T G C G A C T A C T G A T C G A G T C C G T A C T A G A C T G A G T C C G T A T A C G A T C G C T G A C T A G C G T A C T A G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGGCAGGAGAG
SCAGYCADGCATGAC--
 A C G T A T G C G A C T A C T G A T C G A G T C C G T A C T A G A C T G A G T C C G T A T A C G A T C G C T G A C T A G C G T A C T A G
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTGGCAGGCAGGAGAG
GSCTGTCACTCA------
 A C G T A C G T A T G C G A C T A C T G A T C G A G T C C G T A C T A G A C T G A G T C C G T A T A C G A T C G C T G A C T A G C G T A C T A G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T