Information for 13-CTTGTAATTCAVC (Motif 24)

A G T C A C G T A C G T A C T G C G A T G T C A C G T A A C G T A G C T A G T C C G T A T A G C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C T G C T G A C G T A C G A T A C G T C G T A A G T C C G T A C G T A A C T G
p-value:1e-9
log p-value:-2.204e+01
Information Content per bp:1.845
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.8 +/- 24.7bp
Average Position of motif in Background52.1 +/- 13.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTTGTAATTCAVC
SCTGTCAVTCAV-
 A G T C A C G T A C G T A C T G C G A T G T C A C G T A A C G T A G C T A G T C C G T A T A G C A G T C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTTGTAATTCAVC
NCTGTCAATCAN-
 A G T C A C G T A C G T A C T G C G A T G T C A C G T A A C G T A G C T A G T C C G T A T A G C A G T C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTTGTAATTCAVC
GSCTGTCACTCA--
 A C G T A G T C A C G T A C G T A C T G C G A T G T C A C G T A A C G T A G C T A G T C C G T A T A G C A G T C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------CTTGTAATTCAVC
TAAGCCACTTGAAATT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G A T G T C A C G T A A C G T A G C T A G T C C G T A T A G C A G T C
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T A C G T A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:5
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------CTTGTAATTCAVC
TAAGCCACTTGAAATT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G A T G T C A C G T A A C G T A G C T A G T C C G T A T A G C A G T C
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T A C G T A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:6
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------CTTGTAATTCAVC
TAAGCCACTTGAATTT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G A T G T C A C G T A A C G T A G C T A G T C C G T A T A G C A G T C
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTTGTAATTCAVC-
CTTTGTTATGCAAAT
 A C G T A G T C A C G T A C G T A C T G C G A T G T C A C G T A A C G T A G C T A G T C C G T A T A G C A G T C A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

PB0169.1_Sox15_2/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTTGTAATTCAVC
TTGAATGAAATTCGA-
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G A T G T C A C G T A A C G T A G C T A G T C C G T A T A G C A G T C
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------CTTGTAATTCAVC
GCTGACCTTGAACTN----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G A T G T C A C G T A A C G T A G C T A G T C C G T A T A G C A G T C
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CTTGTAATTCAVC--
---GYCATCMATCAT
 A G T C A C G T A C G T A C T G C G A T G T C A C G T A A C G T A G C T A G T C C G T A T A G C A G T C A C G T A C G T
A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T