Information for 12-AGRAAAGCCCCRW (Motif 23)

C T G A C T A G C T G A C G T A C G T A C G T A C T A G A G T C A G T C G T A C G T A C C T A G C G T A
Reverse Opposite:
C G A T A G T C A C T G A C T G A C T G A C T G A G T C A C G T A C G T A C G T A G C T A G T C A G C T
p-value:1e-9
log p-value:-2.217e+01
Information Content per bp:1.810
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif106.3
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets44.7 +/- 25.0bp
Average Position of motif in Background46.7 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)2.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REL/MA0101.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:AGRAAAGCCCCRW
-GGAAANCCCC--
 C T G A C T A G C T G A C G T A C G T A C G T A C T A G A G T C A G T C G T A C G T A C C T A G C G T A
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:AGRAAAGCCCCRW
-GGAAATCCCC--
 C T G A C T A G C T G A C G T A C G T A C G T A C T A G A G T C A G T C G T A C G T A C C T A G C G T A
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AGRAAAGCCCCRW
-GGAAATTCCC--
 C T G A C T A G C T G A C G T A C G T A C G T A C T A G A G T C A G T C G T A C G T A C C T A G C G T A
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGRAAAGCCCCRW
GGGAAATCCCCN-
 C T G A C T A G C T G A C G T A C G T A C G T A C T A G A G T C A G T C G T A C G T A C C T A G C G T A
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGRAAAGCCCCRW
-GGAAATTCCC--
 C T G A C T A G C T G A C G T A C G T A C G T A C T A G A G T C A G T C G T A C G T A C C T A G C G T A
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGRAAAGCCCCRW----
AGGAGACCCCCAATTTG
 C T G A C T A G C T G A C G T A C G T A C G T A C T A G A G T C A G T C G T A C G T A C C T A G C G T A A C G T A C G T A C G T A C G T
C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGRAAAGCCCCRW-
----AAACCACANN
 C T G A C T A G C T G A C G T A C G T A C G T A C T A G A G T C A G T C G T A C G T A C C T A G C G T A A C G T
A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGRAAAGCCCCRW
---TAATCCCN--
 C T G A C T A G C T G A C G T A C G T A C G T A C T A G A G T C A G T C G T A C G T A C C T A G C G T A
A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AGRAAAGCCCCRW
NACAGGAAAT------
 A C G T A C G T A C G T C T G A C T A G C T G A C G T A C G T A C G T A C T A G A G T C A G T C G T A C G T A C C T A G C G T A
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGRAAAGCCCCRW--
----AAACCACAGAN
 C T G A C T A G C T G A C G T A C G T A C G T A C T A G A G T C A G T C G T A C G T A C C T A G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C