Information for 9-TGCCAATCATGAGGCA (Motif 13)

A C G T A C T G A T G C T A G C C G T A C T G A C A G T A G T C C G T A C A G T T A C G T G C A C T A G A T C G G T A C C T G A
Reverse Opposite:
A G C T A C T G A T G C A G T C A C G T A G T C G T C A C G A T A C T G G C T A A G C T C G A T A C T G T A C G T G A C T C G A
p-value:1e-11
log p-value:-2.579e+01
Information Content per bp:1.692
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif32.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets64.8 +/- 20.5bp
Average Position of motif in Background38.8 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGCCAATCATGAGGCA
--CCAATCAA------
 A C G T A C T G A T G C T A G C C G T A C T G A C A G T A G T C C G T A C A G T T A C G T G C A C T A G A T C G G T A C C T G A
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGCCAATCATGAGGCA
TGCCAA----------
 A C G T A C T G A T G C T A G C C G T A C T G A C A G T A G T C C G T A C A G T T A C G T G C A C T A G A T C G G T A C C T G A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATCATGAGGCA
GGTGCCAAGT--------
 A C G T A C G T A C G T A C T G A T G C T A G C C G T A C T G A C A G T A G T C C G T A C A G T T A C G T G C A C T A G A T C G G T A C C T G A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATCATGAGGCA
CGTGCCAAG---------
 A C G T A C G T A C G T A C T G A T G C T A G C C G T A C T G A C A G T A G T C C G T A C A G T T A C G T G C A C T A G A T C G G T A C C T G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATCATGAGGCA
SCTGTCAVTCAV------
 A C G T A C G T A C G T A C T G A T G C T A G C C G T A C T G A C A G T A G T C C G T A C A G T T A C G T G C A C T A G A T C G G T A C C T G A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATCATGAGGCA
NCTGTCAATCAN------
 A C G T A C G T A C G T A C T G A T G C T A G C C G T A C T G A C A G T A G T C C G T A C A G T T A C G T G C A C T A G A T C G G T A C C T G A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAATCATGAGGCA
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A C T G A T G C T A G C C G T A C T G A C A G T A G T C C G T A C A G T T A C G T G C A C T A G A T C G G T A C C T G A
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGCCAATCATGAGGCA
ATGCCAACC--------
 A C G T A C G T A C T G A T G C T A G C C G T A C T G A C A G T A G T C C G T A C A G T T A C G T G C A C T A G A T C G G T A C C T G A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TGCCAATCATGAGGCA
ACTAGCCAATCA-------
 A C G T A C G T A C G T A C G T A C T G A T G C T A G C C G T A C T G A C A G T A G T C C G T A C A G T T A C G T G C A C T A G A T C G G T A C C T G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TGCCAATCATGAGGCA
AAATGGACCAATCAG------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C T A G C C G T A C T G A C A G T A G T C C G T A C A G T T A C G T G C A C T A G A T C G G T A C C T G A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T