Information for 1-GGRAATTCCCMNN (Motif 1)

C T A G A C T G T C A G T C G A C G T A C A G T A G C T A G T C A G T C G T A C G T C A C T A G A G T C
Reverse Opposite:
T C A G G A T C C A G T A C T G A C T G C T A G T C G A G T C A G C A T A G C T A G T C A G T C G A T C
p-value:1e-38
log p-value:-8.930e+01
Information Content per bp:1.609
Number of Target Sequences with motif101.0
Percentage of Target Sequences with motif13.52%
Number of Background Sequences with motif1311.9
Percentage of Background Sequences with motif2.71%
Average Position of motif in Targets52.4 +/- 24.6bp
Average Position of motif in Background49.8 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GGRAATTCCCMNN
GGAAATCCCC---
 C T A G A C T G T C A G T C G A C G T A C A G T A G C T A G T C A G T C G T A C G T C A C T A G A G T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--GGRAATTCCCMNN
NGGGGATTTCCC---
 A C G T A C G T C T A G A C T G T C A G T C G A C G T A C A G T A G C T A G T C A G T C G T A C G T C A C T A G A G T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GGRAATTCCCMNN
GGAAATTCCC---
 C T A G A C T G T C A G T C G A C G T A C A G T A G C T A G T C A G T C G T A C G T C A C T A G A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GGRAATTCCCMNN
GGAAATTCCC---
 C T A G A C T G T C A G T C G A C G T A C A G T A G C T A G T C A G T C G T A C G T C A C T A G A G T C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:5
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GGRAATTCCCMNN
GGGGATTCCCCC-
 C T A G A C T G T C A G T C G A C G T A C A G T A G C T A G T C A G T C G T A C G T C A C T A G A G T C
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GGRAATTCCCMNN
AGGGGATTCCCCT-
 A C G T C T A G A C T G T C A G T C G A C G T A C A G T A G C T A G T C A G T C G T A C G T C A C T A G A G T C
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GGRAATTCCCMNN
GGAAANCCCC---
 C T A G A C T G T C A G T C G A C G T A C A G T A G C T A G T C A G T C G T A C G T C A C T A G A G T C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GGRAATTCCCMNN
AGGGGATTCCCCT-
 A C G T C T A G A C T G T C A G T C G A C G T A C A G T A G C T A G T C A G T C G T A C G T C A C T A G A G T C
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:GGRAATTCCCMNN
------TCCCCA-
 C T A G A C T G T C A G T C G A C G T A C A G T A G C T A G T C A G T C G T A C G T C A C T A G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGRAATTCCCMNN---
GGGTGTGCCCAAAAGG
 C T A G A C T G T C A G T C G A C G T A C A G T A G C T A G T C A G T C G T A C G T C A C T A G A G T C A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G