Information for 5-TTGTTGGCAG (Motif 7)

A C G T C G A T A C T G A G C T C A G T C A T G A T C G T G A C G C T A C T A G
Reverse Opposite:
G A T C C G A T A C T G T A G C G T A C G T C A T C G A T G A C G C T A T G C A
p-value:1e-12
log p-value:-2.892e+01
Information Content per bp:1.667
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif8.10%
Number of Background Sequences with motif1377.7
Percentage of Background Sequences with motif2.89%
Average Position of motif in Targets48.0 +/- 26.0bp
Average Position of motif in Background50.0 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:TTGTTGGCAG
--CTTGGCAA
 A C G T C G A T A C T G A G C T C A G T C A T G A T C G T G A C G C T A C T A G
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TTGTTGGCAG-
-NNTTGGCANN
 A C G T C G A T A C T G A G C T C A G T C A T G A T C G T G A C G C T A C T A G A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:TTGTTGGCAG-
--NTTGGCANN
 A C G T C G A T A C T G A G C T C A G T C A T G A T C G T G A C G C T A C T A G A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.74
Offset:3
Orientation:forward strand
Alignment:TTGTTGGCAG
---TTGGCA-
 A C G T C G A T A C T G A G C T C A G T C A T G A T C G T G A C G C T A C T A G
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TTGTTGGCAG
-GGTTGGCAT
 A C G T C G A T A C T G A G C T C A G T C A T G A T C G T G A C G C T A C T A G
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TTGTTGGCAG-
GGTGYTGACAGS
 A C G T A C G T C G A T A C T G A G C T C A G T C A T G A T C G T G A C G C T A C T A G A C G T
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TTGTTGGCAG-
---TTGACAGC
 A C G T C G A T A C T G A G C T C A G T C A T G A T C G T G A C G C T A C T A G A C G T
A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TTGTTGGCAG--
--VBTGWCAGCB
 A C G T C G A T A C T G A G C T C A G T C A T G A T C G T G A C G C T A C T A G A C G T A C G T
A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTGTTGGCAG
-TNNGGGCAG
 A C G T C G A T A C T G A G C T C A G T C A T G A T C G T G A C G C T A C T A G
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTGTTGGCAG---
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T C G A T A C T G A G C T C A G T C A T G A T C G T G A C G C T A C T A G A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T