Information for 2-AATGGCTNTTSTCCAG (Motif 3)

C G T A C G T A A C G T A T C G A T C G A G T C A C G T A G C T A G C T A C G T T A G C A G C T A G T C A G T C C G T A C T A G
Reverse Opposite:
A G T C C G A T A C T G C T A G C T G A A T C G C G T A C T G A C T A G C G T A C T A G A T G C A T G C G T C A A C G T A C G T
p-value:1e-16
log p-value:-3.773e+01
Information Content per bp:1.801
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 25.1bp
Average Position of motif in Background65.4 +/- 11.6bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AATGGCTNTTSTCCAG
CCTTAATNGNTTTT------
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T A T C G A T C G A G T C A C G T A G C T A G C T A C G T T A G C A G C T A G T C A G T C C G T A C T A G
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AATGGCTNTTSTCCAG
GTTAATGGCC---------
 A C G T A C G T A C G T C G T A C G T A A C G T A T C G A T C G A G T C A C G T A G C T A G C T A C G T T A G C A G C T A G T C A G T C C G T A C T A G
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AATGGCTNTTSTCCAG
NTAATKGTTT--------
 A C G T A C G T C G T A C G T A A C G T A T C G A T C G A G T C A C G T A G C T A G C T A C G T T A G C A G C T A G T C A G T C C G T A C T A G
A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AATGGCTNTTSTCCAG
CTAATCGNT---------
 A C G T A C G T C G T A C G T A A C G T A T C G A T C G A G T C A C G T A G C T A G C T A C G T T A G C A G C T A G T C A G T C C G T A C T A G
G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf21/MA0832.1/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AATGGCTNTTSTCCAG
GCAACAGCTGTTGT----
 A C G T A C G T C G T A C G T A A C G T A T C G A T C G A G T C A C G T A G C T A G C T A C G T T A G C A G C T A G T C A G T C C G T A C T A G
T C A G G A T C C T G A G T C A A G T C G T C A A C T G A G T C A C G T A C T G A C G T G A C T T C A G A G C T A C G T A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:6
Score:0.52
Offset:8
Orientation:forward strand
Alignment:AATGGCTNTTSTCCAG
--------TTTTCCA-
 C G T A C G T A A C G T A T C G A T C G A G T C A C G T A G C T A G C T A C G T T A G C A G C T A G T C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AATGGCTNTTSTCCAG
--TGACCTTTGCCCTA
 C G T A C G T A A C G T A T C G A T C G A G T C A C G T A G C T A G C T A C G T T A G C A G C T A G T C A G T C C G T A C T A G
A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

PH0006.1_Barhl2/Jaspar

Match Rank:8
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----AATGGCTNTTSTCCAG
NNNTTAATTGGTTTTT-----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A T C G A T C G A G T C A C G T A G C T A G C T A C G T T A G C A G C T A G T C A G T C C G T A C T A G
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T A C G T A C G T A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:AATGGCTNTTSTCCAG-
--TGACCTTTGCCCTAN
 C G T A C G T A A C G T A T C G A T C G A G T C A C G T A G C T A G C T A C G T T A G C A G C T A G T C A G T C C G T A C T A G A C G T
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:AATGGCTNTTSTCCAG
----NCCATTGTTY--
 C G T A C G T A A C G T A T C G A T C G A G T C A C G T A G C T A G C T A C G T T A G C A G C T A G T C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T