Information for 9-GAGTRANRGACAT (Motif 12)

A C T G C G T A A C T G A G C T T C G A G T C A A C G T C T A G A C T G C G T A A G T C C T G A C G A T
Reverse Opposite:
C G T A A G C T C T A G A C G T A G T C A G T C G T C A A C G T A G C T C T G A G T A C A C G T G T A C
p-value:1e-9
log p-value:-2.205e+01
Information Content per bp:1.758
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif22.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets48.7 +/- 25.5bp
Average Position of motif in Background53.8 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GAGTRANRGACAT
AGGTGHCAGACA-
 A C T G C G T A A C T G A G C T T C G A G T C A A C G T C T A G A C T G C G T A A G T C C T G A C G A T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAGTRANRGACAT
AGGTGNCAGACAG
 A C T G C G T A A C T G A G C T T C G A G T C A A C G T C T A G A C T G C G T A A G T C C T G A C G A T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GAGTRANRGACAT---
-----AAGGATATNTN
 A C T G C G T A A C T G A G C T T C G A G T C A A C G T C T A G A C T G C G T A A G T C C T G A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGTRANRGACAT
TGAGTGACAGSC--
 A C G T A C T G C G T A A C T G A G C T T C G A G T C A A C G T C T A G A C T G C G T A A G T C C T G A C G A T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GAGTRANRGACAT-
--NTGATTGACAGN
 A C T G C G T A A C T G A G C T T C G A G T C A A C G T C T A G A C T G C G T A A G T C C T G A C G A T A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GAGTRANRGACAT-
--BTGABTGACAGS
 A C T G C G T A A C T G A G C T T C G A G T C A A C G T C T A G A C T G C G T A A G T C C T G A C G A T A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GAGTRANRGACAT
-GGTTAGAGACCT
 A C T G C G T A A C T G A G C T T C G A G T C A A C G T C T A G A C T G C G T A A G T C C T G A C G A T
A C G T C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:forward strand
Alignment:GAGTRANRGACAT
------TTGACAG
 A C T G C G T A A C T G A G C T T C G A G T C A A C G T C T A G A C T G C G T A A G T C C T G A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

PB0126.1_Gata5_2/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GAGTRANRGACAT------
--GACAGAGATATCAGTGT
 A C T G C G T A A C T G A G C T T C G A G T C A A C G T C T A G A C T G C G T A A G T C C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GAGTRANRGACAT----
CAAATCCAGACATCACA
 A C T G C G T A A C T G A G C T T C G A G T C A A C G T C T A G A C T G C G T A A G T C C T G A C G A T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A