Information for 3-GCAGGCAAAGSGA (Motif 5)

A C T G T A G C C T G A A C T G A C T G T G A C C G T A C T G A C G T A A C T G A T C G C T A G G T C A
Reverse Opposite:
A C G T A G T C A T G C G T A C A C G T A G C T C G A T A C T G A G T C A G T C A G C T A C T G G T A C
p-value:1e-12
log p-value:-2.961e+01
Information Content per bp:1.829
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif45.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets50.4 +/- 26.1bp
Average Position of motif in Background49.5 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCAGGCAAAGSGA
-AAGGCAAGTGT-
 A C T G T A G C C T G A A C T G A C T G T G A C C G T A C T G A C G T A A C T G A T C G C T A G G T C A
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GCAGGCAAAGSGA
--TGGAAAA----
 A C T G T A G C C T G A A C T G A C T G T G A C C G T A C T G A C G T A A C T G A T C G C T A G G T C A
A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCAGGCAAAGSGA
-AAAACAAAGG--
 A C T G T A G C C T G A A C T G A C T G T G A C C G T A C T G A C G T A A C T G A T C G C T A G G T C A
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCAAAGSGA-
AAACAGACAAAGGAAT
 A C G T A C G T A C T G T A G C C T G A A C T G A C T G T G A C C G T A C T G A C G T A A C T G A T C G C T A G G T C A A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

IRF2/MA0051.1/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCAGGCAAAGSGA---------
----GGAAAGCGAAACCAAAAC
 A C T G T A G C C T G A A C T G A C T G T G A C C G T A C T G A C G T A A C T G A T C G C T A G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCAGGCAAAGSGA-
TAGGGCAAAGGTCA
 A C T G T A G C C T G A A C T G A C T G T G A C C G T A C T G A C G T A A C T G A T C G C T A G G T C A A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCAGGCAAAGSGA
CCAGGAACAG---
 A C T G T A G C C T G A A C T G A C T G T G A C C G T A C T G A C G T A A C T G A T C G C T A G G T C A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCAAAGSGA
AGAAAGTGAAAGTGA
 A C G T A C G T A C T G T A G C C T G A A C T G A C T G T G A C C G T A C T G A C G T A A C T G A T C G C T A G G T C A
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAAAGSGA-
TGGGGCAAAGGTCA
 A C T G T A G C C T G A A C T G A C T G T G A C C G T A C T G A C G T A A C T G A T C G C T A G G T C A A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCAAAGSGA
TBGCACGCAA-----
 A C G T A C G T A C T G T A G C C T G A A C T G A C T G T G A C C G T A C T G A C G T A A C T G A T C G C T A G G T C A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T