Information for 8-GATGGCTGGCTGG (Motif 14)

A C T G G T C A A G C T A C T G A T C G A G T C A C G T A C T G A C T G A G T C A C G T A T C G A C T G
Reverse Opposite:
A G T C A T G C C G T A A C T G A G T C A G T C C G T A A C T G A T G C A G T C C T G A A C G T A G T C
p-value:1e-9
log p-value:-2.157e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.7 +/- 12.8bp
Average Position of motif in Background50.9 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GATGGCTGGCTGG
GTCATGCHTGRCTGS
 A C G T A C G T A C T G G T C A A G C T A C T G A T C G A G T C A C G T A C T G A C T G A G T C A C G T A T C G A C T G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GATGGCTGGCTGG
-----CTGTCTGG
 A C T G G T C A A G C T A C T G A T C G A G T C A C G T A C T G A C T G A G T C A C G T A T C G A C T G
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GATGGCTGGCTGG-
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C T G G T C A A G C T A C T G A T C G A G T C A C G T A C T G A C T G A G T C A C G T A T C G A C T G A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GATGGCTGGCTGG
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C T G G T C A A G C T A C T G A T C G A G T C A C G T A C T G A C T G A G T C A C G T A T C G A C T G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GATGGCTGGCTGG
-----TWGTCTGV
 A C T G G T C A A G C T A C T G A T C G A G T C A C G T A C T G A C T G A G T C A C G T A T C G A C T G
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:GATGGCTGGCTGG
-------NGCTN-
 A C T G G T C A A G C T A C T G A T C G A G T C A C G T A C T G A C T G A G T C A C G T A T C G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GATGGCTGGCTGG
---VBSYGTCTGG
 A C T G G T C A A G C T A C T G A T C G A G T C A C G T A C T G A C T G A G T C A C G T A T C G A C T G
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GATGGCTGGCTGG-
--TGATTGGCTANN
 A C T G G T C A A G C T A C T G A T C G A G T C A C G T A C T G A C T G A G T C A C G T A T C G A C T G A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GATGGCTGGCTGG
--GGTCTGGCAT-
 A C T G G T C A A G C T A C T G A T C G A G T C A C G T A C T G A C T G A G T C A C G T A T C G A C T G
A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GATGGCTGGCTGG-----
-NAGANTGGCGGGGNGNA
 A C T G G T C A A G C T A C T G A T C G A G T C A C G T A C T G A C T G A G T C A C G T A T C G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A