Information for 5-TGCACAATGTCCT (Motif 5)

A C G T C T A G G A T C G T C A A T G C G C T A T C G A A C G T A C T G A C G T A G T C A T G C A C G T
Reverse Opposite:
C G T A A T C G T A C G G T C A G T A C C G T A A C G T C G A T A T C G A C G T C A T G G A T C G T C A
p-value:1e-12
log p-value:-2.942e+01
Information Content per bp:1.774
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif14.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.5 +/- 22.7bp
Average Position of motif in Background50.0 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGCACAATGTCCT-
GRACAGWMTGTYCTB
 A C G T A C G T C T A G G A T C G T C A A T G C G C T A T C G A A C G T A C T G A C G T A G T C A T G C A C G T A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TGCACAATGTCCT
--GACAATGNN--
 A C G T C T A G G A T C G T C A A T G C G C T A T C G A A C G T A C T G A C G T A G T C A T G C A C G T
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T

NR3C2/MA0727.1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGCACAATGTCCT-
GGGAACACAATGTTCCC
 A C G T A C G T A C G T A C G T C T A G G A T C G T C A A T G C G C T A T C G A A C G T A C T G A C G T A G T C A T G C A C G T A C G T
C A T G C T A G C A T G C G T A T G C A A T G C C T G A G A T C C G T A C T G A G A C T A T C G G A C T G C A T G A T C A G T C G T A C

NR3C1/MA0113.3/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGCACAATGTCCT-
GGGTACATAATGTTCCC
 A C G T A C G T A C G T A C G T C T A G G A T C G T C A A T G C G C T A T C G A A C G T A C T G A C G T A G T C A T G C A C G T A C G T
C T A G C T A G C T A G C G A T C G T A A T G C C T G A G A C T C G T A C T G A G A C T A T C G A C G T G C A T G A T C G A T C G T A C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGCACAATGTCCT-
GAACADWATGTTCTT
 A C G T A C G T C T A G G A T C G T C A A T G C G C T A T C G A A C G T A C T G A C G T A G T C A T G C A C G T A C G T
C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGCACAATGTCCT
---ACAAAG----
 A C G T C T A G G A T C G T C A A T G C G C T A T C G A A C G T A C T G A C G T A G T C A T G C A C G T
A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGCACAATGTCCT-
GVACAGNMTGTYCTB
 A C G T A C G T C T A G G A T C G T C A A T G C G C T A T C G A A C G T A C T G A C G T A G T C A T G C A C G T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGCACAATGTCCT
CTCACACAATGGCGC
 A C G T A C G T A C G T C T A G G A T C G T C A A T G C G C T A T C G A A C G T A C T G A C G T A G T C A T G C A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGCACAATGTCCT-
AGNACAGNCTGTTCTN
 A C G T A C G T A C G T C T A G G A T C G T C A A T G C G C T A T C G A A C G T A C T G A C G T A G T C A T G C A C G T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGCACAATGTCCT-
AGNACANNNTGTNCTN
 A C G T A C G T A C G T C T A G G A T C G T C A A T G C G C T A T C G A A C G T A C T G A C G T A G T C A T G C A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C